C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003G5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000119638-ENSG00000170348 CGP 9606 14:75079353-75176631
GeneTranscriptPositionBiotype
ENSG00000119638 (NEK9)
NIMA-related kinase 9 		ENST00000238616 (NEK9-001) 75079353-75127080 protein_coding
ENST00000553823 (NEK9-005) 75118887-75127344 protein_coding
ENST00000553945 (NEK9-011) 75120516-75127053 nonsense_mediated_decay
ENST00000554258 (NEK9-007) 75117213-75126933 nonsense_mediated_decay
ENST00000555405 (NEK9-004) 75082121-75091685 retained_intron
ENST00000555537 (NEK9-009) 75096670-75101065 retained_intron
ENST00000555763 (NEK9-010) 75084087-75085095 processed_transcript
ENST00000555961 (NEK9-008) 75118869-75120730 retained_intron
ENST00000556170 (NEK9-002) 75086429-75127045 retained_intron
ENST00000557026 (NEK9-003) 75082121-75117245 retained_intron
ENST00000557673 (NEK9-006) 75117217-75127040 protein_coding
ENSG00000119703 (ZC2HC1C)
zinc finger, C2HC-type containing 1C 		ENST00000238686 (ZC2HC1C-008) 75069577-75078423 protein_coding
ENST00000439583 (ZC2HC1C-002) 75069641-75078089 protein_coding
ENST00000524913 (ZC2HC1C-001) 75069280-75079987 protein_coding
ENST00000525046 (ZC2HC1C-005) 75069677-75070849 protein_coding
ENST00000526130 (ZC2HC1C-003) 75069673-75071087 protein_coding
ENST00000526748 (ZC2HC1C-004) 75069674-75078091 processed_transcript
ENST00000532198 (ZC2HC1C-007) 75070974-75077819 protein_coding
ENST00000534151 (ZC2HC1C-006) 75064170-75070853 protein_coding
ENST00000554763 (ZC2HC1C-009) 75069641-75071056 protein_coding
ENSG00000170348 (TMED10)
transmembrane emp24-like trafficking protein 10 (yeast) 		ENST00000303575 (TMED10-001) 75131470-75176631 protein_coding
ENST00000555036 (TMED10-006) 75134440-75147760 retained_intron
ENST00000555085 (TMED10-007) 75147555-75176612 retained_intron
ENST00000555873 (TMED10-003) 75134500-75176597 nonsense_mediated_decay
ENST00000556969 (TMED10-005) 75133938-75147781 retained_intron
ENST00000557670 (TMED10-004) 75134356-75147897 processed_transcript
ENST00000622441 (TMED10-008) 75175921-75176532 processed_transcript
ENSG00000258978 (HIF1AP1)
hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) pseudogene 1 		ENST00000553642 (HIF1AP1-001) 75116426-75116600 processed_pseudogene
CIL_0003G5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034290-ENSMUSG00000021248 CGP 10090 12:85299514-85374717
GeneTranscriptPositionBiotype
ENSMUSG00000021248 (Tmed10)
transmembrane emp24-like trafficking protein 10 (yeast) 		ENSMUST00000040766 (Tmed10-201) 85340614-85374717 protein_coding
ENSMUSG00000034290 (Nek9)
NIMA (never in mitosis gene a)-related expressed kinase 9 		ENSMUST00000040992 (Nek9-001) 85299514-85339362 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003G5_0001ENSG00000119638ENST00000238616ENST00000553823ENST00000553945ENST00000554258ENST00000555405ENST00000555537ENST00000555763ENST00000555961ENST00000556170ENST00000557026ENST00000557673ENSG00000119703ENST00000238686ENST00000439583ENST00000524913ENST00000525046ENST00000526130ENST00000526748ENST00000532198ENST00000534151ENST00000554763ENSG00000170348ENST00000303575ENST00000555036ENST00000555085ENST00000555873ENST00000556969ENST00000557670ENST00000622441ENSG00000258978ENST00000553642CIL_0003G5_0002ENSMUSG00000021248ENSMUST00000040766ENSMUSG00000034290ENSMUST00000040992
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003G5_0001ENSG00000119638ENST00000238616ENST00000555405ENST00000556170ENST00000557026ENST00000557673ENSG00000119703ENST00000238686ENST00000439583ENST00000532198ENSG00000170348ENST00000303575ENST00000555085ENST00000556969ENST00000557670ENSG00000258978ENST00000553642CIL_0003G5_0002ENSMUSG00000021248ENSMUST00000040766ENSMUSG00000034290ENSMUST00000040992
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000119638 ENST00000238616 N/A N/A N/A 0.834±0.51 N/A 0.939±0.00 N/A N/A 0.666±0.00 N/A N/A 1.281±0.67 N/A N/A
ENST00000553823 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553945 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554258 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555405 N/A N/A 1.462±0.00 N/A 3.934±2.22 6.563±4.10 2.015±0.00 1.691±0.00 4.268±0.51 5.441±0.68 2.690±0.00 11.868±4.92 3.272±0.13 16.367±0.00
ENST00000555537 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555763 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556170 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.406±0.00 N/A N/A
ENST00000557026 N/A N/A 2.036±0.00 3.851±3.24 5.962±4.46 8.129±0.00 0.735±0.00 2.496±0.90 3.408±0.00 5.873±0.00 2.237±0.00 4.693±3.13 9.122±0.00 15.430±2.01
ENST00000557673 N/A N/A N/A N/A N/A N/A N/A 6.611±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000119703 ENST00000238686 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.011±0.00
ENST00000439583 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 45.714±3.68
ENST00000524913 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525046 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526130 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526748 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532198 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 90.539±0.00
ENST00000534151 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554763 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000170348 ENST00000303575 41.416±0.00 26.679±0.00 7.556±0.00 18.538±6.85 34.602±5.49 28.379±11.34 17.819±9.15 30.251±6.67 27.484±6.42 27.321±6.66 24.369±18.71 39.455±14.84 38.436±7.80 34.795±9.93
ENST00000555036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555085 N/A N/A 14.418±0.00 22.543±0.00 40.410±0.00 27.719±0.00 20.572±0.00 47.132±0.00 N/A 30.997±0.00 20.435±0.00 26.627±0.00 N/A N/A
ENST00000555873 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556969 N/A N/A 4.187±0.00 N/A N/A 9.526±0.00 N/A 10.970±0.00 N/A N/A N/A 10.260±0.00 N/A N/A
ENST00000557670 N/A 28.315±0.00 N/A 29.004±0.00 31.759±0.00 N/A 30.164±0.00 44.382±0.00 54.081±0.00 35.952±0.00 4.670±0.00 55.498±0.00 73.293±22.44 50.330±7.33
ENST00000622441 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000258978 ENST00000553642 N/A N/A N/A 0.152±0.00 N/A N/A N/A N/A 6.108±0.00 3.857±0.00 N/A 0.228±0.00 N/A 0.220±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021248 ENSMUST00000040766 41.908±2.61 273.122±28.48 50.096±0.88 23.806±8.11 72.362±53.59 41.459±36.45 26.180±2.48 44.486±14.57 39.928±10.00 87.624±16.85 23.994±0.88 120.183±48.96 52.495±22.80 15.532±7.20
ENSMUSG00000034290 ENSMUST00000040992 24.158±2.56 18.658±6.47 27.888±1.56 10.731±2.65 17.697±0.66 14.182±1.22 23.831±1.40 15.005±0.34 8.176±1.26 22.740±4.09 44.536±2.27 21.448±3.47 13.547±3.70 10.610±1.77

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