C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane emp24-like trafficking protein 10 (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000303575 TMED10-001 ENSG00000170348 9606 - 14:75131470-75176631 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000303575
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000303575 41.416±0.00 26.679±0.00 7.556±0.00 18.538±6.85 34.602±5.49 28.379±11.34 17.819±9.15 30.251±6.67 27.484±6.42 27.321±6.66 24.369±18.71 39.455±14.84 38.436±7.80 34.795±9.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084S CIL_00084S_0001 VISTA 14:74936670-75538350
CIL_00085H CIL_00085H_0001 VISTA 14:74957721-75560295
CIL_0007PT CIL_0007PT_0001 VISTA 14:74957738-75560035
CIL_0003G5 CIL_0003G5_0001 CGP 14:75079353-75176631
CIL_0004K7 CIL_0004K7_0002 CGP 14:75131470-75282230

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 IDA Golgi membrane
GO:0001822 IEA kidney development
GO:0005515 IPI protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005793 IDA endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 IDA Golgi apparatus
GO:0005801 ISS cis-Golgi network
GO:0005886 ISS plasma membrane
GO:0006810 IEA transport
GO:0006886 IDA intracellular protein transport
GO:0006888 TAS ER to Golgi vesicle-mediated transport
GO:0006890 ISS retrograde vesicle-mediated transport, Golgi to ER
GO:0007030 IEA Golgi organization
GO:0016021 ISS:IEA integral component of membrane
GO:0019905 IPI syntaxin binding
GO:0030137 ISS COPI-coated vesicle
GO:0030140 ISS trans-Golgi network transport vesicle
GO:0030667 ISS secretory granule membrane
GO:0032403 IEA protein complex binding
GO:0035459 TAS cargo loading into vesicle
GO:0035964 IDA COPI-coated vesicle budding
GO:0042589 ISS zymogen granule membrane
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0043279 IEA response to alkaloid
GO:0045055 ISS regulated secretory pathway
GO:0048199 ISS vesicle targeting, to, from or within Golgi
GO:0048205 TAS COPI coating of Golgi vesicle
GO:0048208 TAS COPII vesicle coating
GO:0051259 IEA protein oligomerization
GO:0070062 IDA extracellular vesicular exosome
GO:0070765 IDA gamma-secretase complex
GO:1902003 IMP regulation of beta-amyloid formation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040766 Tmed10-201 protein_coding Mus_musculus 0 1236
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.0000000007 71

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