C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: V-set and transmembrane domain containing 2A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000170419 VSTM2A 9606 + 7:54542325-54571080 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000302287 VSTM2A-001 54542325-54552531 protein_coding
  ENST00000402613 VSTM2A-004 54542605-54569446 protein_coding
  ENST00000404951 VSTM2A-002 54542416-54570495 protein_coding
  ENST00000407838 VSTM2A-003 54542325-54571080 protein_coding
  ENST00000466888 VSTM2A-007 54546672-54569287 processed_transcript
  ENST00000469952 VSTM2A-008 54546993-54550919 processed_transcript
  ENST00000495904 VSTM2A-005 54542326-54547160 retained_intron
  ENST00000498834 VSTM2A-006 54546161-54569489 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverOvaryTestisENST00000302287ENST00000404951ENST00000407838ENST00000466888ENST00000469952ENST00000495904ENST00000498834
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Ovary Testis
ENST00000302287 N/A N/A N/A 0.042±0.00 0.102±0.00 0.007±0.00 0.009±0.00 0.478±0.00 0.008±0.00 0.101±0.02
ENST00000404951 N/A 0.026±0.00 N/A 0.013±0.00 N/A 0.049±0.00 N/A N/A N/A 0.319±0.00
ENST00000407838 N/A N/A 16.152±10.44 0.293±0.00 0.233±0.06 N/A N/A N/A N/A 0.130±0.00
ENST00000466888 0.026±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469952 N/A N/A N/A N/A N/A 0.054±0.00 N/A N/A N/A N/A
ENST00000495904 N/A N/A N/A N/A 0.640±0.00 N/A N/A 1.740±0.00 N/A N/A
ENST00000498834 N/A N/A N/A N/A 0.454±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006LU CIL_0006LU_0001 CGP 7:54542325-54759974

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021909 VSTM2A (1 of 2) V-set and transmembrane domain containing 2A protein_coding Danio_rerio
ENSDARG00000088300 VSTM2A (2 of 2) V-set and transmembrane domain containing 2A protein_coding Danio_rerio
ENSMUSG00000048834 Vstm2a V-set and transmembrane domain containing 2A protein_coding Mus_musculus

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