C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006LU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000170419-ENSG00000132432 CGP 9606 7:54542325-54759974
GeneTranscriptPositionBiotype
ENSG00000132432 (SEC61G)
Sec61 gamma subunit 		ENST00000352861 (SEC61G-201) 54752251-54759246 protein_coding
ENST00000395535 (SEC61G-002) 54752250-54759246 protein_coding
ENST00000415949 (SEC61G-001) 54752253-54759974 protein_coding
ENST00000450622 (SEC61G-005) 54752257-54759182 protein_coding
ENST00000460484 (SEC61G-003) 54754792-54759198 retained_intron
ENST00000461536 (SEC61G-006) 54755503-54759215 retained_intron
ENST00000480303 (SEC61G-004) 54755405-54759241 retained_intron
ENSG00000170419 (VSTM2A)
V-set and transmembrane domain containing 2A 		ENST00000302287 (VSTM2A-001) 54542325-54552531 protein_coding
ENST00000402613 (VSTM2A-004) 54542605-54569446 protein_coding
ENST00000404951 (VSTM2A-002) 54542416-54570495 protein_coding
ENST00000407838 (VSTM2A-003) 54542325-54571080 protein_coding
ENST00000466888 (VSTM2A-007) 54546672-54569287 processed_transcript
ENST00000469952 (VSTM2A-008) 54546993-54550919 processed_transcript
ENST00000495904 (VSTM2A-005) 54542326-54547160 retained_intron
ENST00000498834 (VSTM2A-006) 54546161-54569489 processed_transcript
ENSG00000200471 (RNU6-1125P)
RNA, U6 small nuclear 1125, pseudogene 		ENST00000363601 (RNU6-1125P-201) 54621025-54621131 snRNA
ENSG00000224223 (VSTM2A-OT1)
VSTM2A overlapping transcript 1 		ENST00000456049 (VSTM2A-OT1-001) 54556970-54571726 sense_overlapping
ENSG00000228735 (GS1-18A18.2)
 ENST00000439027 (GS1-18A18.2-001) 54576052-54578794 lincRNA
ENSG00000232612 (RPL31P35)
ribosomal protein L31 pseudogene 35 		ENST00000431058 (RPL31P35-001) 54656358-54656734 processed_pseudogene
ENSG00000234707 (RP11-745C15.2)
 ENST00000439413 (RP11-745C15.2-001) 54759425-54804928 antisense
CIL_0006LU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000048834-ENSMUSG00000078974 CGP 10090 11:16257724-16508484
GeneTranscriptPositionBiotype
ENSMUSG00000048834 (Vstm2a)
V-set and transmembrane domain containing 2A 		ENSMUST00000109645 (Vstm2a-002) 16257724-16284186 protein_coding
ENSMUST00000109647 (Vstm2a-001) 16257803-16427310 protein_coding
ENSMUSG00000078974 (Sec61g)
SEC61, gamma subunit 		ENSMUST00000109641 (Sec61g-002) 16501651-16508069 protein_coding
ENSMUST00000109642 (Sec61g-005) 16501387-16508166 protein_coding
ENSMUST00000109643 (Sec61g-001) 16500530-16508484 protein_coding
ENSMUST00000131439 (Sec61g-004) 16501643-16505044 retained_intron
ENSMUST00000138695 (Sec61g-003) 16506092-16508132 retained_intron
ENSMUST00000166950 (Sec61g-201) 16501638-16508484 protein_coding
ENSMUST00000178855 (Sec61g-202) 16501638-16508484 protein_coding
ENSMUSG00000083925 (Gm12012)
predicted gene 12012 		ENSMUST00000118857 (Gm12012-001) 16439254-16440319 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006LU_0001ENSG00000132432ENST00000352861ENST00000395535ENST00000415949ENST00000450622ENST00000460484ENST00000461536ENST00000480303ENSG00000170419ENST00000302287ENST00000402613ENST00000404951ENST00000407838ENST00000466888ENST00000469952ENST00000495904ENST00000498834ENSG00000200471ENST00000363601ENSG00000224223ENST00000456049ENSG00000228735ENST00000439027ENSG00000232612ENST00000431058ENSG00000234707ENST00000439413CIL_0006LU_0002ENSMUSG00000048834ENSMUST00000109645ENSMUST00000109647ENSMUSG00000078974ENSMUST00000109641ENSMUST00000109642ENSMUST00000109643ENSMUST00000131439ENSMUST00000138695ENSMUST00000166950ENSMUST00000178855ENSMUSG00000083925ENSMUST00000118857
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006LU_0001ENSG00000132432ENST00000352861ENST00000395535ENST00000450622ENST00000460484ENSG00000170419ENST00000302287ENST00000404951ENST00000407838ENST00000466888ENST00000469952ENST00000495904ENST00000498834ENSG00000200471ENST00000363601ENSG00000224223ENST00000456049ENSG00000228735ENST00000439027ENSG00000232612ENST00000431058ENSG00000234707ENST00000439413CIL_0006LU_0002ENSMUSG00000048834ENSMUST00000109645ENSMUST00000109647ENSMUSG00000078974ENSMUST00000109641ENSMUST00000109643ENSMUST00000138695ENSMUST00000166950ENSMUST00000178855ENSMUSG00000083925ENSMUST00000118857
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000132432 ENST00000352861 55.127±0.00 58.074±0.00 5.145±0.00 38.582±21.24 35.856±12.81 35.439±16.85 25.134±2.36 36.201±7.17 28.807±6.76 23.894±2.61 21.048±6.02 99.410±60.15 65.273±42.48 109.187±11.94
ENST00000395535 N/A N/A N/A N/A N/A N/A 3.741±0.00 N/A N/A 10.043±0.00 N/A 20.727±0.00 7.194±0.00 17.480±0.00
ENST00000415949 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450622 N/A N/A N/A 12.711±0.00 N/A 37.843±0.00 N/A 23.011±0.00 32.419±0.00 13.295±0.00 7.901±0.00 41.204±0.00 21.132±6.86 19.214±0.00
ENST00000460484 N/A N/A 0.221±0.00 N/A N/A 1.093±0.00 N/A N/A N/A 1.902±0.00 N/A N/A N/A N/A
ENST00000461536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000170419 ENST00000302287 N/A N/A N/A N/A 0.042±0.00 0.102±0.00 0.007±0.00 0.009±0.00 0.478±0.00 N/A N/A 0.008±0.00 N/A 0.101±0.02
ENST00000402613 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000404951 N/A N/A 0.026±0.00 N/A 0.013±0.00 N/A 0.049±0.00 N/A N/A N/A N/A N/A N/A 0.319±0.00
ENST00000407838 N/A N/A N/A 16.152±10.44 0.293±0.00 0.233±0.06 N/A N/A N/A N/A N/A N/A N/A 0.130±0.00
ENST00000466888 N/A 0.026±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469952 N/A N/A N/A N/A N/A N/A 0.054±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000495904 N/A N/A N/A N/A N/A 0.640±0.00 N/A N/A 1.740±0.00 N/A N/A N/A N/A N/A
ENST00000498834 N/A N/A N/A N/A N/A 0.454±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000200471 ENST00000363601 N/A N/A N/A 0.166±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000224223 ENST00000456049 N/A N/A N/A N/A N/A N/A 0.012±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000228735 ENST00000439027 N/A N/A N/A 0.171±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.711±1.80
ENSG00000232612 ENST00000431058 N/A 0.133±0.00 N/A 0.047±0.00 0.045±0.00 0.042±0.00 N/A N/A N/A 0.212±0.00 0.118±0.00 N/A N/A N/A
ENSG00000234707 ENST00000439413 N/A N/A N/A 0.089±0.00 N/A N/A N/A N/A N/A N/A N/A 0.069±0.00 0.145±0.00 0.642±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000048834 ENSMUST00000109645 0.789±0.61 0.055±0.00 0.234±0.00 8.049±2.61 0.044±0.02 0.118±0.03 N/A 0.779±0.49 0.015±0.00 0.574±0.20 0.024±0.02 0.275±0.23 0.030±0.01 N/A
ENSMUST00000109647 N/A 0.058±0.00 N/A N/A 0.083±0.00 0.138±0.09 0.038±0.02 N/A 0.009±0.01 N/A 0.015±0.00 N/A 0.026±0.00 0.471±0.02
ENSMUSG00000078974 ENSMUST00000109641 N/A 1.483±0.23 N/A N/A N/A N/A N/A N/A 5.337±0.78 N/A 11.392±0.00 102.105±38.84 94.492±42.65 N/A
ENSMUST00000109642 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000109643 1.147±0.25 N/A N/A 2.265±0.00 N/A N/A N/A N/A N/A N/A N/A 0.486±0.00 N/A N/A
ENSMUST00000131439 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138695 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.715±16.83 59.782±7.71 N/A
ENSMUST00000166950 11.837±1.91 2.715±0.56 59.648±11.49 42.423±19.95 12.059±9.27 6.582±0.96 14.804±0.77 13.596±3.75 69.398±66.45 9.603±1.44 48.945±5.58 14.169±13.76 80.027±34.52 22.169±2.77
ENSMUST00000178855 N/A N/A N/A N/A N/A N/A N/A N/A 12.104±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000083925 ENSMUST00000118857 N/A N/A N/A 0.015±0.01 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.059±0.05

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