C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: exosome component 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000171311 EXOSC1 9606 - 10:97436142-97446017 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000370884 EXOSC1-004 97436406-97446017 protein_coding
  ENST00000370885 EXOSC1-008 97436248-97445993 protein_coding
  ENST00000370886 EXOSC1-009 97436244-97445988 protein_coding
  ENST00000370902 EXOSC1-001 97436142-97446017 protein_coding
  ENST00000471049 EXOSC1-012 97436540-97445973 processed_transcript
  ENST00000472345 EXOSC1-010 97437260-97445910 processed_transcript
  ENST00000474309 EXOSC1-013 97444222-97445833 processed_transcript
  ENST00000476234 EXOSC1-006 97440764-97446006 retained_intron
  ENST00000477692 EXOSC1-005 97436396-97445850 protein_coding
  ENST00000485122 EXOSC1-011 97436333-97445985 protein_coding
  ENST00000489158 EXOSC1-003 97443787-97446006 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000370884ENST00000370885ENST00000370886ENST00000370902ENST00000476234ENST00000477692ENST00000485122ENST00000489158
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000370884 N/A N/A N/A 2.395±0.00 2.280±0.00 N/A N/A 5.093±0.00 N/A N/A N/A N/A N/A 3.785±0.00
ENST00000370885 9.868±0.00 12.157±0.00 2.121±0.00 2.955±1.70 9.590±0.00 4.714±3.97 2.259±0.00 9.829±0.00 10.208±0.00 10.619±0.00 7.545±0.00 4.146±2.53 4.837±0.34 13.858±0.00
ENST00000370886 N/A N/A N/A 2.038±0.00 N/A N/A N/A N/A 3.659±0.00 N/A 2.275±0.00 N/A N/A N/A
ENST00000370902 3.301±0.00 9.311±0.00 N/A 2.018±0.35 2.806±0.61 3.064±0.00 1.492±0.05 2.681±0.45 3.003±0.68 1.926±0.00 N/A 10.354±6.44 4.605±2.60 4.517±1.43
ENST00000476234 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.632±0.00 N/A N/A
ENST00000477692 N/A N/A N/A 5.000±0.00 N/A 4.143±1.75 N/A N/A N/A N/A 4.320±0.00 8.921±0.00 4.019±0.00 7.678±0.00
ENST00000485122 4.699±0.00 6.783±0.00 N/A N/A 4.607±0.00 N/A 2.663±0.00 N/A N/A 6.512±0.00 N/A N/A N/A N/A
ENST00000489158 N/A N/A N/A 0.470±0.05 N/A N/A 0.180±0.00 N/A 0.226±0.00 N/A N/A 1.120±0.00 N/A 1.069±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005Y0 CIL_0005Y0_0001 CGP 10:97436142-97457370

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000178 IEA exosome (RNase complex)
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005829 TAS cytosol
GO:0006364 IEA rRNA processing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059841 exosc1 exosome component 1 protein_coding Danio_rerio
ENSMUSG00000034321 Exosc1 exosome component 1 protein_coding Mus_musculus

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