C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: exosome component 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370902 EXOSC1-001 ENSG00000171311 9606 - 10:97436142-97446017 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000370902
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000370902 3.301±0.00 9.311±0.00 2.018±0.35 2.806±0.61 3.064±0.00 1.492±0.05 2.681±0.45 3.003±0.68 1.926±0.00 10.354±6.44 4.605±2.60 4.517±1.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005Y0 CIL_0005Y0_0001 CGP 10:97436142-97457370

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000178 NAS:IEA exosome (RNase complex)
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0003723 NAS:IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005829 TAS cytosol
GO:0006364 IEA rRNA processing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075280 Exosc1-201 protein_coding Mus_musculus 0 769
ENSMUST00000112123 Exosc1-202 protein_coding Mus_musculus 0 311

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