C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glycine amidinotransferase (L-arginine:glycine amidinotransferase)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000171766 GATM 9606 - 15:45361124-45402327 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000396659 GATM-001 45361124-45378793 protein_coding
  ENST00000458245 GATM-012 45379202-45402327 processed_transcript
  ENST00000527933 GATM-013 45380500-45397346 processed_transcript
  ENST00000558118 GATM-005 45369383-45378484 nonsense_mediated_decay
  ENST00000558163 GATM-004 45366462-45378519 protein_coding
  ENST00000558336 GATM-002 45363631-45378547 protein_coding
  ENST00000558362 GATM-003 45361126-45378544 retained_intron
  ENST00000558537 GATM-006 45369327-45378075 protein_coding
  ENST00000558916 GATM-010 45364824-45369707 retained_intron
  ENST00000559885 GATM-007 45369378-45377035 protein_coding
  ENST00000560538 GATM-009 45376609-45397259 processed_transcript
  ENST00000561148 GATM-008 45369329-45402218 protein_coding
  ENST00000561376 GATM-011 45364324-45366070 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000396659ENST00000558336ENST00000558362ENST00000558537
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000396659 4.783±0.00 8.702±0.00 123.490±0.00 36.892±14.48 3.861±1.08 4.946±3.52 4.979±0.00 202.205±134.27 77.788±74.47 2.593±0.49 7.132±1.15 13.561±11.82 16.284±2.49 19.953±4.21
ENST00000558336 N/A N/A N/A N/A N/A N/A 1.682±0.00 N/A N/A N/A N/A 6.438±4.12 N/A N/A
ENST00000558362 N/A N/A N/A N/A N/A 0.378±0.00 0.379±0.00 N/A 1.273±0.00 0.458±0.00 N/A 0.942±0.00 N/A 3.621±0.00
ENST00000558537 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.904±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ND CIL_0004ND_0001 CGP 15:45252230-45402327

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005739 IEA mitochondrion
GO:0005743 IEA mitochondrial inner membrane
GO:0005758 IDA mitochondrial intermembrane space
GO:0006600 TAS creatine metabolic process
GO:0006601 IEA creatine biosynthetic process
GO:0006979 IEA response to oxidative stress
GO:0007584 IEA response to nutrient
GO:0010033 IEA response to organic substance
GO:0015067 IEA amidinotransferase activity
GO:0015068 IDA glycine amidinotransferase activity
GO:0016813 IEA hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
GO:0034641 TAS cellular nitrogen compound metabolic process
GO:0042246 IEA tissue regeneration
GO:0043434 IEA response to peptide hormone
GO:0044281 TAS small molecule metabolic process
GO:0046689 IEA response to mercury ion
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036239 gatm glycine amidinotransferase (L-arginine:glycine amidinotransferase) protein_coding Danio_rerio
ENSMUSG00000027199 Gatm glycine amidinotransferase (L-arginine:glycine amidinotransferase) protein_coding Mus_musculus

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