C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004ND_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000137860-ENSG00000171766 CGP 9606 15:45252230-45402327
GeneTranscriptPositionBiotype
ENSG00000137860 (SLC28A2)
solute carrier family 28 (concentrative nucleoside transporter), member 2 		ENST00000347644 (SLC28A2-001) 45252230-45277845 protein_coding
ENST00000559924 (SLC28A2-004) 45263061-45267752 nonsense_mediated_decay
ENST00000560438 (SLC28A2-003) 45252234-45264683 protein_coding
ENST00000560767 (SLC28A2-002) 45271774-45275951 processed_transcript
ENSG00000171766 (GATM)
glycine amidinotransferase (L-arginine:glycine amidinotransferase) 		ENST00000396659 (GATM-001) 45361124-45378793 protein_coding
ENST00000458245 (GATM-012) 45379202-45402327 processed_transcript
ENST00000527933 (GATM-013) 45380500-45397346 processed_transcript
ENST00000558118 (GATM-005) 45369383-45378484 nonsense_mediated_decay
ENST00000558163 (GATM-004) 45366462-45378519 protein_coding
ENST00000558336 (GATM-002) 45363631-45378547 protein_coding
ENST00000558362 (GATM-003) 45361126-45378544 retained_intron
ENST00000558537 (GATM-006) 45369327-45378075 protein_coding
ENST00000558916 (GATM-010) 45364824-45369707 retained_intron
ENST00000559885 (GATM-007) 45369378-45377035 protein_coding
ENST00000560538 (GATM-009) 45376609-45397259 processed_transcript
ENST00000561148 (GATM-008) 45369329-45402218 protein_coding
ENST00000561376 (GATM-011) 45364324-45366070 retained_intron
ENSG00000235390 (CTD-2651B20.5)
 ENST00000560007 (CTD-2651B20.5-001) 45321077-45321692 processed_pseudogene
ENSG00000259433 (CTD-2651B20.4)
 ENST00000560646 (CTD-2651B20.4-001) 45330209-45332634 processed_pseudogene
ENSG00000259520 (CTD-2651B20.3)
 ENST00000559003 (CTD-2651B20.3-003) 45251580-45256002 antisense
ENST00000560344 (CTD-2651B20.3-001) 45253506-45279227 antisense
ENST00000561404 (CTD-2651B20.3-002) 45255124-45279251 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0004ND_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000079071-ENSMUSG00000027199 CGP 10090 2:122484941-122611303
GeneTranscriptPositionBiotype
ENSMUSG00000027199 (Gatm)
glycine amidinotransferase (L-arginine:glycine amidinotransferase) 		ENSMUST00000028624 (Gatm-001) 122594467-122611303 protein_coding
ENSMUST00000140808 (Gatm-002) 122595606-122598812 retained_intron
ENSMUST00000154598 (Gatm-003) 122595489-122598534 processed_transcript
ENSMUSG00000079071 (Gm14085)
predicted gene 14085 		ENSMUST00000110521 (Gm14085-001) 122484941-122528040 protein_coding
ENSMUST00000132215 (Gm14085-002) 122485917-122488191 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004ND_0001ENSG00000137860ENST00000347644ENST00000559924ENST00000560438ENST00000560767ENSG00000171766ENST00000396659ENST00000458245ENST00000527933ENST00000558118ENST00000558163ENST00000558336ENST00000558362ENST00000558537ENST00000558916ENST00000559885ENST00000560538ENST00000561148ENST00000561376ENSG00000235390ENST00000560007ENSG00000259433ENST00000560646ENSG00000259520ENST00000559003ENST00000560344ENST00000561404CIL_0004ND_0002ENSMUSG00000027199ENSMUST00000028624ENSMUST00000140808ENSMUST00000154598ENSMUSG00000079071ENSMUST00000110521ENSMUST00000132215
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004ND_0001ENSG00000137860ENST00000347644ENST00000559924ENST00000560767ENSG00000171766ENST00000396659ENST00000558336ENST00000558362ENST00000558537ENSG00000235390ENST00000560007ENSG00000259433ENST00000560646ENSG00000259520ENST00000559003ENST00000560344ENST00000561404CIL_0004ND_0002ENSMUSG00000027199ENSMUST00000028624ENSMUSG00000079071ENSMUST00000110521ENSMUST00000132215
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000137860 ENST00000347644 0.061±0.00 0.046±0.00 N/A 0.063±0.04 0.083±0.00 0.472±0.00 0.042±0.00 N/A 0.039±0.00 0.018±0.00 0.016±0.00 0.064±0.03 0.026±0.00 0.162±0.06
ENST00000559924 N/A N/A 0.473±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.292±0.00
ENST00000560438 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560767 N/A N/A N/A N/A 0.137±0.04 0.288±0.00 N/A N/A 0.040±0.00 0.116±0.00 N/A N/A 0.032±0.00 N/A
ENSG00000171766 ENST00000396659 4.783±0.00 8.702±0.00 123.490±0.00 36.892±14.48 3.861±1.08 4.946±3.52 4.979±0.00 202.205±134.27 77.788±74.47 2.593±0.49 7.132±1.15 13.561±11.82 16.284±2.49 19.953±4.21
ENST00000458245 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527933 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558118 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558163 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558336 N/A N/A N/A N/A N/A N/A 1.682±0.00 N/A N/A N/A N/A 6.438±4.12 N/A N/A
ENST00000558362 N/A N/A N/A N/A N/A 0.378±0.00 0.379±0.00 N/A 1.273±0.00 0.458±0.00 N/A 0.942±0.00 N/A 3.621±0.00
ENST00000558537 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.904±0.00 N/A N/A N/A
ENST00000558916 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559885 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000235390 ENST00000560007 0.251±0.00 0.855±0.00 0.195±0.00 0.377±0.00 0.373±0.00 0.211±0.00 0.121±0.06 0.705±0.00 0.224±0.00 0.309±0.00 0.049±0.00 0.077±0.00 N/A 0.138±0.10
ENSG00000259433 ENST00000560646 0.056±0.00 0.030±0.00 0.432±0.00 0.074±0.04 N/A 0.031±0.02 0.016±0.01 0.088±0.05 0.022±0.00 N/A N/A 0.050±0.04 0.012±0.00 0.058±0.05
ENSG00000259520 ENST00000559003 0.361±0.00 0.854±0.00 N/A 0.352±0.25 0.342±0.00 0.491±0.00 0.343±0.00 N/A N/A 0.123±0.00 0.066±0.00 N/A N/A 0.486±0.00
ENST00000560344 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.070±0.00 N/A
ENST00000561404 N/A 0.371±0.00 N/A 0.304±0.00 N/A N/A 0.118±0.00 N/A 0.180±0.00 0.205±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027199 ENSMUST00000028624 10.316±8.17 2.726±1.36 7.601±0.49 6.814±1.52 8.301±1.07 8.540±2.39 1.864±0.50 547.063±110.15 8.746±4.56 4.912±0.65 2.081±0.45 15.051±3.97 12.320±4.31 39.334±19.65
ENSMUST00000140808 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154598 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000079071 ENSMUST00000110521 0.174±0.23 0.191±0.08 0.004±0.00 0.007±0.01 1.345±0.63 0.066±0.03 0.295±0.32 0.065±0.03 0.023±0.01 0.125±0.04 0.069±0.08 0.247±0.10 0.027±0.01 0.087±0.02
ENSMUST00000132215 0.101±0.06 N/A 0.005±0.00 N/A N/A N/A 0.104±0.03 N/A 0.010±0.00 N/A 0.039±0.01 0.229±0.00 N/A N/A

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