C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glycine amidinotransferase (L-arginine:glycine amidinotransferase)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396659 GATM-001 ENSG00000171766 9606 - 15:45361124-45378793 protein_coding

Homo sapiens EnsemblGRCh38

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000396659
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000396659 4.783±0.00 8.702±0.00 123.490±0.00 36.892±14.48 3.861±1.08 4.946±3.52 4.979±0.00 202.205±134.27 77.788±74.47 2.593±0.49 7.132±1.15 13.561±11.82 16.284±2.49 19.953±4.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ND CIL_0004ND_0001 CGP 15:45252230-45402327

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005739 IEA mitochondrion
GO:0005743 IEA mitochondrial inner membrane
GO:0005758 IDA mitochondrial intermembrane space
GO:0006600 TAS creatine metabolic process
GO:0006601 IEA creatine biosynthetic process
GO:0006979 IEA response to oxidative stress
GO:0007584 IEA response to nutrient
GO:0010033 IEA response to organic substance
GO:0015067 IEA amidinotransferase activity
GO:0015068 IDA glycine amidinotransferase activity
GO:0016813 IEA hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
GO:0034641 TAS cellular nitrogen compound metabolic process
GO:0042246 IEA tissue regeneration
GO:0043434 IEA response to peptide hormone
GO:0044281 TAS small molecule metabolic process
GO:0046689 IEA response to mercury ion
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028624 Gatm-001 protein_coding Mus_musculus 0 2034
ENSMUST00000154598 Gatm-003 processed_transcript Mus_musculus 0 431
ENSMUST00000140808 Gatm-002 retained_intron Mus_musculus 0 270

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