C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S7
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000171863 RPS7 9606 + 2:3575205-3580919 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000304921 RPS7-001 3575205-3580919 protein_coding
  ENST00000403564 RPS7-008 3575325-3580919 protein_coding
  ENST00000406376 RPS7-009 3575358-3580901 protein_coding
  ENST00000407445 RPS7-005 3575322-3580539 protein_coding
  ENST00000462576 RPS7-006 3575325-3580919 retained_intron
  ENST00000472966 RPS7-004 3579819-3580918 retained_intron
  ENST00000479123 RPS7-003 3575633-3576873 retained_intron
  ENST00000481006 RPS7-002 3575358-3580918 retained_intron
  ENST00000491937 RPS7-007 3575345-3580475 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000304921ENST00000406376ENST00000407445
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000304921 224.752±0.00 487.269±0.00 27.469±0.00 83.064±0.71 178.458±57.68 215.670±128.81 69.617±36.79 166.082±62.08 139.380±48.06 249.499±178.22 104.830±44.47 391.647±220.07 309.656±228.29 277.444±24.30
ENST00000406376 N/A N/A 5.619±0.00 N/A N/A N/A 22.783±0.00 N/A 27.640±0.00 83.380±0.00 N/A 1484.300±0.00 597.478±118.47 N/A
ENST00000407445 N/A N/A N/A N/A N/A 13.127±0.00 N/A N/A N/A N/A N/A 14.097±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0002181 IBA cytoplasmic translation
GO:0003723 NAS RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IDA:IEA ribosome
GO:0005856 IEA cytoskeleton
GO:0005925 IDA focal adhesion
GO:0006364 IMP rRNA processing
GO:0006412 IC:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0030529 IDA ribonucleoprotein complex
GO:0030686 IBA 90S preribosome
GO:0032040 IBA small-subunit processome
GO:0042274 IMP ribosomal small subunit biogenesis
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042566 rps7 ribosomal protein S7 protein_coding Danio_rerio
ENSMUSG00000044424 Gm9493 predicted gene 9493 protein_coding Mus_musculus
ENSMUSG00000061477 Rps7 ribosomal protein S7 protein_coding Mus_musculus

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