C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000304921 RPS7-001 ENSG00000171863 9606 + 2:3575205-3580919 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000304921
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000304921 224.752±0.00 487.269±0.00 27.469±0.00 83.064±0.71 178.458±57.68 215.670±128.81 69.617±36.79 166.082±62.08 139.380±48.06 249.499±178.22 104.830±44.47 391.647±220.07 309.656±228.29 277.444±24.30

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0002181 IBA cytoplasmic translation
GO:0003723 NAS RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IDA:IEA ribosome
GO:0005856 IEA cytoskeleton
GO:0005925 IDA focal adhesion
GO:0006364 IMP rRNA processing
GO:0006412 IC:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0030529 IDA ribonucleoprotein complex
GO:0030686 IBA 90S preribosome
GO:0032040 IBA small-subunit processome
GO:0042274 IMP ribosomal small subunit biogenesis
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000074267 Rps7-201 protein_coding Mus_musculus 0 797
ENSMUST00000178147 Gm6472-002 processed_transcript Mus_musculus 0 780
ENSMUST00000187973 Gm6472-001 transcribed_processed_pseudogene Mus_musculus 0 749
ENSMUST00000104916 Gm9493-201 protein_coding Mus_musculus 0 734
ENSMUST00000190473 RP23-300D5.1-001 processed_pseudogene Mus_musculus 0 675
ENSMUST00000119317 Gm8019-001 processed_pseudogene Mus_musculus 0 647
ENSMUST00000116438 Gm7091-001 processed_pseudogene Mus_musculus 0 621
ENSMUST00000178086 Gm4761-201 processed_pseudogene Mus_musculus 0 599
ENSMUST00000120919 Gm12900-001 processed_pseudogene Mus_musculus 0 571
ENSMUST00000121100 Gm5135-001 processed_pseudogene Mus_musculus 0 512
ENSMUST00000163501 Gm17053-001 processed_pseudogene Mus_musculus 0 303

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