C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger protein 554
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000172006 ZNF554 9606 + 19:2819874-2835773 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000317243 ZNF554-001 2819874-2835773 protein_coding
  ENST00000588534 ZNF554-005 2830558-2835772 retained_intron
  ENST00000590116 ZNF554-002 2819919-2835471 nonsense_mediated_decay
  ENST00000591265 ZNF554-004 2819950-2834154 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000317243ENST00000588534ENST00000590116ENST00000591265
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000317243 N/A 0.696±0.00 0.292±0.00 0.880±0.02 N/A 0.513±0.00 0.255±0.00 N/A 0.715±0.21 N/A 0.291±0.00 0.322±0.05 0.989±0.19 1.008±0.00
ENST00000588534 0.312±0.00 1.387±0.00 0.163±0.00 0.367±0.15 0.727±0.13 0.189±0.00 0.195±0.00 0.414±0.00 0.299±0.06 0.322±0.00 0.162±0.00 0.267±0.04 0.471±0.00 0.423±0.00
ENST00000590116 0.250±0.00 N/A 0.250±0.00 1.164±0.00 N/A 0.370±0.00 0.603±0.00 0.606±0.00 N/A 0.978±0.33 0.354±0.00 0.568±0.46 0.277±0.00 1.209±0.37
ENST00000591265 N/A N/A N/A N/A N/A N/A N/A 0.882±0.00 N/A N/A 0.998±0.00 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

No Homologs available.

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