C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: laminin, beta 2 (laminin S)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000172037 LAMB2 9606 - 3:49121114-49133118 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000305544 LAMB2-003 49121133-49133020 protein_coding
  ENST00000418109 LAMB2-001 49121114-49133118 protein_coding
  ENST00000462930 LAMB2-012 49124681-49125379 retained_intron
  ENST00000464891 LAMB2-013 49124811-49125721 processed_transcript
  ENST00000467506 LAMB2-004 49121114-49121976 retained_intron
  ENST00000469665 LAMB2-009 49122494-49123754 retained_intron
  ENST00000477225 LAMB2-010 49123325-49123955 retained_intron
  ENST00000477701 LAMB2-016 49125287-49126183 retained_intron
  ENST00000480640 LAMB2-011 49123720-49124479 retained_intron
  ENST00000483057 LAMB2-014 49124852-49125572 retained_intron
  ENST00000483321 LAMB2-006 49128573-49129272 retained_intron
  ENST00000484713 LAMB2-007 49121115-49121596 retained_intron
  ENST00000486298 LAMB2-015 49125005-49128556 processed_transcript
  ENST00000488638 LAMB2-017 49126363-49128740 retained_intron
  ENST00000493571 LAMB2-005 49125540-49126425 retained_intron
  ENST00000494831 LAMB2-018 49130965-49133056 protein_coding
  ENST00000498377 LAMB2-008 49121257-49122598 retained_intron
  ENST00000538659 LAMB2-020 49123959-49124623 retained_intron
  ENST00000542580 LAMB2-019 49124443-49125204 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000305544ENST00000418109ENST00000484713ENST00000498377
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000305544 34.398±0.00 22.235±0.00 6.140±0.00 2.712±2.29 23.234±20.62 27.515±0.00 45.883±40.81 13.311±11.14 11.328±1.72 26.773±17.69 11.958±4.47 34.958±29.30 56.148±16.88 14.176±10.08
ENST00000418109 8.272±0.00 7.598±0.00 N/A 3.542±0.00 9.952±6.16 N/A 2.408±0.00 2.515±0.00 N/A N/A 4.128±0.00 19.400±0.00 N/A 10.376±0.00
ENST00000484713 N/A N/A N/A N/A N/A N/A N/A N/A 50.216±0.00 N/A 31.098±0.00 N/A N/A N/A
ENST00000498377 N/A 38.204±0.00 11.378±0.00 4.526±0.00 9.724±0.00 7.595±0.00 13.610±0.00 18.793±0.00 21.157±0.00 N/A 7.686±0.00 50.639±26.13 192.049±0.00 48.923±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005N5 CIL_0005N5_0002 CGP 3:49108046-49133118

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000904 IEA cell morphogenesis involved in differentiation
GO:0005178 IEA integrin binding
GO:0005198 NAS structural molecule activity
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005604 IDA basement membrane
GO:0005605 TAS basal lamina
GO:0005608 IPI laminin-3 complex
GO:0007155 IEA cell adhesion
GO:0007411 IEA axon guidance
GO:0007528 IEA neuromuscular junction development
GO:0007601 IEA visual perception
GO:0014002 IEA astrocyte development
GO:0014044 IEA Schwann cell development
GO:0030198 TAS extracellular matrix organization
GO:0031012 IDA extracellular matrix
GO:0031175 IEA neuron projection development
GO:0043256 IEA laminin complex
GO:0043260 TAS laminin-11 complex
GO:0045202 IEA synapse
GO:0048677 IEA axon extension involved in regeneration
GO:0050808 IEA synapse organization
GO:0060041 IEA retina development in camera-type eye
GO:0070062 IDA extracellular vesicular exosome
GO:0072249 IEA metanephric glomerular visceral epithelial cell development
GO:0072274 IEA metanephric glomerular basement membrane development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002084 lamb2 laminin, beta 2 (laminin S) protein_coding Danio_rerio
ENSMUSG00000052911 Lamb2 laminin, beta 2 protein_coding Mus_musculus

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