C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: laminin, beta 2 (laminin S)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000305544 LAMB2-003 ENSG00000172037 9606 - 3:49121133-49133020 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000305544
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000305544 34.398±0.00 22.235±0.00 6.140±0.00 2.712±2.29 23.234±20.62 27.515±0.00 45.883±40.81 13.311±11.14 11.328±1.72 26.773±17.69 11.958±4.47 34.958±29.30 56.148±16.88 14.176±10.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005N5 CIL_0005N5_0002 CGP 3:49108046-49133118

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 NAS structural molecule activity
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005604 IDA basement membrane
GO:0005605 TAS basal lamina
GO:0005608 IPI laminin-3 complex
GO:0007155 IEA cell adhesion
GO:0030198 TAS extracellular matrix organization
GO:0031012 IDA extracellular matrix
GO:0043260 TAS laminin-11 complex
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000065014 Lamb2-201 protein_coding Mus_musculus 0 5734
ENSMUST00000002979 Lamb1-001 protein_coding Mus_musculus 1e-23 117
ENSMUST00000169088 Lamb1-004 protein_coding Mus_musculus 1e-23 117

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