C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ORMDL sphingolipid biosynthesis regulator 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000172057 ORMDL3 9606 - 17:39921041-39927601 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000304046 ORMDL3-001 39921041-39927601 protein_coding
  ENST00000394169 ORMDL3-002 39922277-39926841 protein_coding
  ENST00000579287 ORMDL3-008 39921043-39921749 processed_transcript
  ENST00000579695 ORMDL3-003 39921041-39927601 protein_coding
  ENST00000581284 ORMDL3-006 39922098-39924048 nonsense_mediated_decay
  ENST00000582052 ORMDL3-007 39925796-39926846 processed_transcript
  ENST00000584000 ORMDL3-005 39922625-39927229 protein_coding
  ENST00000584220 ORMDL3-004 39922550-39924203 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000304046ENST00000579287ENST00000579695ENST00000581284
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000304046 31.576±0.00 15.077±0.00 3.529±0.00 8.583±4.92 29.433±28.53 1.026±0.00 5.234±4.10 17.239±5.18 21.395±12.54 13.849±11.06 N/A 29.242±19.36 34.539±8.75 18.567±4.11
ENST00000579287 N/A N/A N/A 12.183±0.00 N/A N/A 4.484±0.00 N/A N/A N/A 6.649±0.00 N/A N/A N/A
ENST00000579695 19.614±0.00 15.971±0.00 N/A 8.461±0.00 13.256±12.30 12.582±0.00 3.466±1.91 8.776±0.00 18.716±0.00 1.220±0.00 3.993±2.56 15.910±9.47 17.491±2.37 15.002±6.79
ENST00000581284 N/A N/A N/A N/A N/A 2.697±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098W CIL_00098W_0001 VISTA 17:39359510-39962707
CIL_0007WH CIL_0007WH_0001 VISTA 17:39374871-39978277
CIL_00098Y CIL_00098Y_0001 VISTA 17:39768583-40372873

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005789 IEA endoplasmic reticulum membrane
GO:0006672 IMP ceramide metabolic process
GO:0016021 IEA integral component of membrane
GO:0035339 IDA SPOTS complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000025555 ormdl3 ORM1-like 3 (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000038150 Ormdl3 ORM1-like 3 (S. cerevisiae) protein_coding Mus_musculus

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