C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ORMDL sphingolipid biosynthesis regulator 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000579695 ORMDL3-003 ENSG00000172057 9606 - 17:39921041-39927601 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000579695
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000579695 19.614±0.00 15.971±0.00 8.461±0.00 13.256±12.30 12.582±0.00 3.466±1.91 8.776±0.00 18.716±0.00 1.220±0.00 3.993±2.56 15.910±9.47 17.491±2.37 15.002±6.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098W CIL_00098W_0001 VISTA 17:39359510-39962707
CIL_0007WH CIL_0007WH_0001 VISTA 17:39374871-39978277
CIL_00098Y CIL_00098Y_0001 VISTA 17:39768583-40372873

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005789 IEA endoplasmic reticulum membrane
GO:0006672 IMP ceramide metabolic process
GO:0016021 IEA integral component of membrane
GO:0035339 IDA SPOTS complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000052919 Ormdl3-001 protein_coding Mus_musculus 0 920
ENSMUST00000120064 Gm12538-001 processed_pseudogene Mus_musculus 0 460

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