C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cleavage and polyadenylation factor I subunit 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000172409 CLP1 9606 + 11:57648992-57661868 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000302731 CLP1-003 57657763-57661864 protein_coding
  ENST00000525602 CLP1-002 57657760-57661436 protein_coding
  ENST00000529430 CLP1-004 57657016-57661849 protein_coding
  ENST00000529773 CLP1-006 57648992-57659752 protein_coding
  ENST00000533682 CLP1-001 57657158-57661868 protein_coding
  ENST00000533905 CLP1-005 57657752-57659873 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000302731ENST00000525602ENST00000529430ENST00000533682ENST00000533905
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000302731 2.212±0.00 1.327±0.00 0.824±0.00 2.043±0.15 1.105±0.08 0.916±0.04 2.776±0.13 1.396±0.00 1.608±0.93 2.078±0.06 2.320±0.74 4.583±1.96 4.799±0.51
ENST00000525602 1.284±0.00 2.091±0.00 N/A 1.727±0.00 N/A 0.773±0.00 1.773±0.00 N/A 1.182±0.13 N/A N/A N/A N/A
ENST00000529430 N/A 1.794±0.00 N/A 1.354±0.00 1.331±0.00 1.003±0.00 1.753±0.00 3.559±0.00 0.970±0.00 1.541±0.00 2.435±0.55 3.683±0.41 2.189±0.00
ENST00000533682 N/A N/A 0.941±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533905 N/A N/A N/A N/A 1.719±0.00 1.003±0.00 3.135±0.00 1.488±0.00 N/A N/A 2.534±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002LP CIL_0002LP_0002 CGP 11:57648992-57701187

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000214 IDA tRNA-intron endonuclease complex
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0005524 TAS ATP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005849 IEA mRNA cleavage factor complex
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006388 IDA tRNA splicing, via endonucleolytic cleavage and ligation
GO:0008219 IEA cell death
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016310 IEA phosphorylation
GO:0021695 IMP cerebellar cortex development
GO:0030423 IMP targeting of mRNA for destruction involved in RNA interference
GO:0031124 TAS mRNA 3'-end processing
GO:0035087 IDA siRNA loading onto RISC involved in RNA interference
GO:0046404 IEA ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity
GO:0051733 IDA polydeoxyribonucleotide kinase activity
GO:0051736 IDA ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063663 CR855307.1 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000027079 Clp1 CLP1, cleavage and polyadenylation factor I subunit protein_coding Mus_musculus

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