C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CLP1, cleavage and polyadenylation factor I subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027079 Clp1 10090 - 2:84722104-84727350 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028475 Clp1-001 84723122-84727350 protein_coding
  ENSMUST00000138231 Clp1-002 84723124-84727276 processed_transcript
  ENSMUST00000165219 Clp1-201 84722104-84727242 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028475ENSMUST00000138231ENSMUST00000165219
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028475 5.420±1.53 4.652±0.97 7.730±1.70 5.191±2.14 6.096±0.75 5.223±0.77 2.051±0.31 5.139±0.61 15.036±9.26 5.603±0.36 1.603±0.18 7.366±0.90 10.494±1.97 16.482±3.14
ENSMUST00000138231 2.032±0.00 2.151±0.43 N/A N/A 3.813±1.57 1.504±0.16 N/A 1.518±0.48 N/A N/A N/A 1.672±0.00 3.074±0.00 N/A
ENSMUST00000165219 N/A N/A N/A 0.208±0.00 0.782±0.00 0.723±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000214 ISS tRNA-intron endonuclease complex
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005849 IEA mRNA cleavage factor complex
GO:0006388 ISS tRNA splicing, via endonucleolytic cleavage and ligation
GO:0008219 IEA cell death
GO:0016310 IEA phosphorylation
GO:0021695 IMP cerebellar cortex development
GO:0030423 ISS targeting of mRNA for destruction involved in RNA interference
GO:0031124 IEA mRNA 3'-end processing
GO:0035087 ISS siRNA loading onto RISC involved in RNA interference
GO:0046404 IEA ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity
GO:0051733 ISS polydeoxyribonucleotide kinase activity
GO:0051736 ISS ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063663 CR855307.1 Uncharacterized protein protein_coding Danio_rerio
ENSG00000172409 CLP1 cleavage and polyadenylation factor I subunit 1 protein_coding Homo_sapiens

Loading