C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cleavage and polyadenylation factor I subunit 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000529430 CLP1-004 ENSG00000172409 9606 + 11:57657016-57661849 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000529430
Transcript ID Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000529430 1.794±0.00 1.354±0.00 1.331±0.00 1.003±0.00 1.753±0.00 3.559±0.00 0.970±0.00 1.541±0.00 2.435±0.55 3.683±0.41 2.189±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002LP CIL_0002LP_0002 CGP 11:57648992-57701187

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000214 IEA:IDA tRNA-intron endonuclease complex
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0005524 IEA:TAS ATP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005849 IEA mRNA cleavage factor complex
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006388 IEA:IDA tRNA splicing, via endonucleolytic cleavage and ligation
GO:0008219 IEA cell death
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016310 IEA phosphorylation
GO:0021695 IMP cerebellar cortex development
GO:0030423 IMP targeting of mRNA for destruction involved in RNA interference
GO:0031124 IEA:TAS mRNA 3'-end processing
GO:0035087 IEA:IDA siRNA loading onto RISC involved in RNA interference
GO:0046404 IEA ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity
GO:0051733 IDA polydeoxyribonucleotide kinase activity
GO:0051736 IEA:IDA ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000165219 Clp1-201 protein_coding Mus_musculus 0 1679
ENSMUST00000028475 Clp1-001 protein_coding Mus_musculus 0 1679
ENSMUST00000138231 Clp1-002 processed_transcript Mus_musculus 0 863

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