C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sphingomyelin phosphodiesterase, acid-like 3A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000368440 SMPDL3A-001 ENSG00000172594 9606 + 6:122789170-122809720 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000368440
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000368440 3.771±0.00 2.402±0.00 0.939±0.00 1.135±0.00 1.188±0.45 2.497±0.00 1.085±0.00 4.490±0.13 16.676±0.00 1.501±0.33 2.339±0.00 2.282±0.86 15.039±6.06 0.922±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005OQ CIL_0005OQ_0001 CGP 6:122779475-122809720

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004767 IEA sphingomyelin phosphodiesterase activity
GO:0005515 IPI protein binding
GO:0005615 IEA extracellular space
GO:0006685 IEA sphingomyelin catabolic process
GO:0008150 ND biological_process
GO:0016787 IEA hydrolase activity
GO:0016798 IEA hydrolase activity, acting on glycosyl bonds
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020022 Smpdl3a-001 protein_coding Mus_musculus 0 1206
ENSMUST00000125076 Smpdl3a-003 processed_transcript Mus_musculus 0 682
ENSMUST00000151623 Smpdl3a-002 protein_coding Mus_musculus 0 398

Loading