C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Rho family GTPase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000172602 RND1 9606 - 12:48857145-48865898 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000309739 RND1-001 48857145-48865898 protein_coding
  ENST00000548445 RND1-002 48857147-48859282 retained_intron
  ENST00000550607 RND1-005 48857145-48861131 protein_coding
  ENST00000551243 RND1-003 48861030-48865855 nonsense_mediated_decay
  ENST00000553260 RND1-004 48858097-48862210 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000309739ENST00000548445ENST00000550607ENST00000551243ENST00000553260
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000309739 0.349±0.00 0.727±0.00 N/A 14.231±9.48 1.232±0.38 1.102±0.00 N/A 2.036±0.69 4.505±3.63 31.704±29.66 N/A 2.329±2.24 0.402±0.16 0.996±0.75
ENST00000548445 N/A 0.442±0.00 0.019±0.00 N/A 0.375±0.00 0.291±0.00 0.108±0.00 0.141±0.00 N/A 0.583±0.00 N/A 0.309±0.00 0.078±0.00 0.614±0.00
ENST00000550607 N/A N/A N/A N/A N/A 1.101±0.00 N/A N/A N/A N/A N/A N/A 0.153±0.00 N/A
ENST00000551243 0.187±0.00 N/A N/A N/A N/A 0.983±0.00 0.058±0.00 N/A N/A N/A 0.735±0.00 N/A N/A N/A
ENST00000553260 0.349±0.00 N/A 0.168±0.00 N/A N/A N/A N/A 3.140±0.00 N/A N/A N/A 1.126±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000F CIL_00000F_0001 CGP 12:48829764-48865898

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 NAS GTPase activity
GO:0005102 IPI receptor binding
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0005912 IDA adherens junction
GO:0006184 NAS:IEA GTP catabolic process
GO:0007015 IDA actin filament organization
GO:0007162 IDA negative regulation of cell adhesion
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0007411 TAS axon guidance
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016322 IDA neuron remodeling

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004218 rnd1l Rho family GTPase 1 like protein_coding Danio_rerio
ENSDARG00000030547 rnd1 Rho family GTPase 1 protein_coding Danio_rerio
ENSMUSG00000054855 Rnd1 Rho family GTPase 1 protein_coding Mus_musculus

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