C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Rho family GTPase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000054855 Rnd1 10090 - 15:98663421-98677461 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000003451 Rnd1-001 98669205-98677461 protein_coding
  ENSMUST00000109149 Rnd1-003 98663421-98677460 protein_coding
  ENSMUST00000120997 Rnd1-002 98672217-98677458 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003451ENSMUST00000109149ENSMUST00000120997
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003451 1.076±0.11 0.771±0.35 0.634±0.09 3.418±1.78 0.795±0.39 0.423±0.23 0.409±0.11 0.596±0.15 1.985±1.91 4.868±0.22 0.893±0.25 0.409±0.21 0.520±0.39 0.086±0.03
ENSMUST00000109149 0.460±0.01 0.881±0.23 N/A 1.135±0.00 1.131±0.29 1.174±0.30 0.292±0.00 0.479±0.24 1.506±1.42 2.685±0.00 0.553±0.00 1.229±0.60 0.141±0.04 0.101±0.00
ENSMUST00000120997 0.952±0.30 0.427±0.00 0.478±0.19 1.999±0.32 2.777±0.00 0.694±0.00 0.587±0.21 0.893±0.00 2.035±2.17 6.931±0.51 N/A 0.512±0.00 0.231±0.09 0.131±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000F CIL_00000F_0002 CGP 15:98645134-98677461

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005102 IEA receptor binding
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005829 TAS cytosol
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0005912 IEA adherens junction
GO:0007015 IEA actin filament organization
GO:0007162 IEA negative regulation of cell adhesion
GO:0007264 IEA small GTPase mediated signal transduction
GO:0016322 IEA neuron remodeling

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004218 rnd1l Rho family GTPase 1 like protein_coding Danio_rerio
ENSDARG00000030547 rnd1 Rho family GTPase 1 protein_coding Danio_rerio
ENSG00000172602 RND1 Rho family GTPase 1 protein_coding Homo_sapiens

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