C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho family GTPase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000309739 RND1-001 ENSG00000172602 9606 - 12:48857145-48865898 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000309739
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000309739 0.349±0.00 0.727±0.00 14.231±9.48 1.232±0.38 1.102±0.00 2.036±0.69 4.505±3.63 31.704±29.66 2.329±2.24 0.402±0.16 0.996±0.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000F CIL_00000F_0001 CGP 12:48829764-48865898

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 NAS GTPase activity
GO:0005102 IPI receptor binding
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0005912 IDA adherens junction
GO:0006184 NAS:IEA GTP catabolic process
GO:0007015 IDA actin filament organization
GO:0007162 IDA negative regulation of cell adhesion
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0007411 TAS axon guidance
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016322 IDA neuron remodeling

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000003451 Rnd1-001 protein_coding Mus_musculus 0 1450
ENSMUST00000120997 Rnd1-002 protein_coding Mus_musculus 0 601
ENSMUST00000109149 Rnd1-003 protein_coding Mus_musculus 0 593

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