C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 21, member C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000172661 FAM21C 9606 + 10:45727200-45792964 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000336378 FAM21C-201 45727236-45792961 protein_coding
  ENST00000359860 FAM21C-202 45737432-45792964 protein_coding
  ENST00000374359 FAM21C-002 45779016-45785963 retained_intron
  ENST00000374362 FAM21C-001 45727219-45792961 protein_coding
  ENST00000420848 FAM21C-004 45727288-45751553 protein_coding
  ENST00000471102 FAM21C-003 45786370-45792601 retained_intron
  ENST00000485850 FAM21C-005 45740191-45744943 retained_intron
  ENST00000537517 FAM21C-203 45727200-45792961 protein_coding
  ENST00000540872 FAM21C-204 45727200-45792961 protein_coding
  ENST00000623400 FAM21C-006 45727264-45792936 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000336378ENST00000374359ENST00000374362ENST00000420848ENST00000471102ENST00000537517ENST00000540872ENST00000623400
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000336378 N/A N/A N/A N/A N/A N/A N/A 0.334±0.00 N/A N/A 0.466±0.00 1.175±0.00 N/A N/A
ENST00000374359 N/A N/A N/A N/A N/A N/A N/A 2.102±0.00 N/A N/A N/A N/A N/A N/A
ENST00000374362 N/A N/A N/A N/A N/A 0.498±0.00 0.374±0.00 N/A N/A 1.018±0.00 N/A N/A N/A N/A
ENST00000420848 N/A N/A N/A N/A N/A N/A N/A N/A 2.310±0.00 N/A 0.697±0.00 3.138±1.33 1.513±0.00 1.578±0.00
ENST00000471102 0.751±0.00 3.359±0.00 2.305±0.00 0.703±0.00 1.986±1.08 1.276±0.48 0.756±0.32 1.596±0.00 1.287±0.84 1.080±0.07 0.580±0.00 2.862±2.07 N/A 1.108±0.00
ENST00000537517 1.830±0.00 2.388±0.00 N/A 0.993±0.46 1.561±0.02 1.286±0.58 0.610±0.31 2.238±0.00 0.606±0.00 1.650±0.00 1.577±0.00 2.379±1.79 2.405±0.74 2.384±0.84
ENST00000540872 0.631±0.00 N/A N/A 0.912±0.00 N/A N/A 0.303±0.00 N/A 0.524±0.00 0.534±0.00 N/A 0.459±0.00 0.646±0.00 N/A
ENST00000623400 N/A N/A 0.543±0.00 0.753±0.00 0.768±0.00 0.726±0.00 N/A 0.574±0.00 N/A N/A N/A 1.295±0.00 0.973±0.11 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081B CIL_00081B_0001 VISTA 10:45257434-45860222
CIL_0006FR CIL_0006FR_0002 CGP 10:45615501-45792964

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005768 IDA endosome
GO:0005769 ISS early endosome
GO:0005886 IEA plasma membrane
GO:0042147 ISS retrograde transport, endosome to Golgi
GO:0071203 ISS WASH complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062532 fam21c family with sequence similarity 21, member C protein_coding Danio_rerio
ENSMUSG00000024104 Fam21 family with sequence similarity 21 protein_coding Mus_musculus

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