C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synuclein, gamma (breast cancer-specific protein 1)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000173267 SNCG 9606 + 10:86958618-86963260 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000348795 SNCG-001 86958630-86963165 protein_coding
  ENST00000372017 SNCG-002 86958656-86963260 protein_coding
  ENST00000465679 SNCG-004 86958618-86962873 processed_transcript
  ENST00000483064 SNCG-003 86959375-86963258 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000348795ENST00000372017ENST00000465679ENST00000483064
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000348795 16.173±0.00 34.251±0.00 N/A 26.960±0.00 124.347±0.00 7.959±7.67 4.641±0.00 3.732±0.00 0.570±0.00 18.319±0.00 3.587±0.00 0.354±0.00 0.863±0.00 8.674±0.00
ENST00000372017 42.636±0.00 67.085±0.00 N/A 52.458±37.30 133.464±132.75 51.318±0.00 1.914±1.48 5.127±0.00 4.090±3.44 2.250±2.14 3.346±0.74 27.156±17.69 10.427±6.35 18.922±15.86
ENST00000465679 N/A N/A 0.399±0.00 N/A N/A N/A 0.626±0.00 1.407±0.00 N/A 0.403±0.00 2.145±0.00 1.015±0.20 N/A 0.922±0.00
ENST00000483064 N/A N/A N/A N/A 2.209±0.00 0.578±0.00 N/A 0.078±0.00 2.428±0.00 N/A N/A 1.657±0.00 2.991±1.29 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005OA CIL_0005OA_0002 CGP 10:86756650-86969481

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002118 IEA aggressive behavior
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0007268 IEA synaptic transmission
GO:0008344 IEA adult locomotory behavior
GO:0009306 IEA protein secretion
GO:0014059 IEA regulation of dopamine secretion
GO:0030424 IEA axon
GO:0042220 IEA response to cocaine
GO:0042493 IEA response to drug
GO:0043014 IEA alpha-tubulin binding
GO:0043025 IEA neuronal cell body
GO:0043679 IEA axon terminus
GO:0046928 IEA regulation of neurotransmitter secretion
GO:0048471 IEA perinuclear region of cytoplasm
GO:0048487 IEA beta-tubulin binding
GO:0050808 IEA synapse organization
GO:0070062 IDA extracellular vesicular exosome
GO:0071464 IEA cellular response to hydrostatic pressure

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000023064 Sncg synuclein, gamma protein_coding Mus_musculus

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