C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: C1q and tumor necrosis factor related protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000173918 C1QTNF1 9606 + 17:79022814-79049788 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000311661 C1QTNF1-002 79024261-79049787 protein_coding
  ENST00000339142 C1QTNF1-004 79024171-79049787 protein_coding
  ENST00000354124 C1QTNF1-201 79022934-79049787 protein_coding
  ENST00000392445 C1QTNF1-003 79025663-79049788 protein_coding
  ENST00000578229 C1QTNF1-006 79022814-79048247 protein_coding
  ENST00000579760 C1QTNF1-001 79024070-79048475 protein_coding
  ENST00000580454 C1QTNF1-007 79022971-79048247 protein_coding
  ENST00000580474 C1QTNF1-005 79043593-79048466 protein_coding
  ENST00000581774 C1QTNF1-009 79034185-79048247 protein_coding
  ENST00000582295 C1QTNF1-008 79024169-79025052 processed_transcript
  ENST00000582625 C1QTNF1-011 79046901-79048316 processed_transcript
  ENST00000583904 C1QTNF1-010 79041726-79048247 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000311661ENST00000339142ENST00000354124ENST00000392445ENST00000579760ENST00000580454ENST00000580474ENST00000581774ENST00000582295ENST00000582625ENST00000583904
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000311661 40.271±0.00 79.261±0.00 0.208±0.00 4.034±0.00 17.781±16.85 13.821±0.00 33.186±0.00 14.011±0.00 4.896±3.03 14.515±0.00 3.650±0.00 29.968±5.14 30.415±1.44 11.696±0.00
ENST00000339142 N/A N/A N/A 0.456±0.00 N/A N/A N/A 0.778±0.00 N/A N/A 0.995±0.00 N/A N/A N/A
ENST00000354124 N/A N/A 0.182±0.00 N/A 1.034±0.00 N/A 0.802±0.00 1.543±0.00 3.216±0.00 N/A N/A 3.299±0.00 12.388±0.00 N/A
ENST00000392445 16.632±0.00 N/A N/A 2.000±0.00 2.359±0.00 0.906±0.00 0.355±0.00 N/A N/A 2.763±2.17 1.962±0.00 0.627±0.13 N/A 0.316±0.00
ENST00000579760 N/A N/A N/A 2.968±0.00 N/A 0.687±0.00 12.320±10.57 1.405±0.00 N/A N/A N/A 10.759±6.57 N/A N/A
ENST00000580454 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.696±0.00 N/A 22.659±0.00 N/A N/A
ENST00000580474 N/A N/A 0.118±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581774 N/A N/A N/A N/A N/A 1.066±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582295 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.489±0.00 N/A N/A
ENST00000582625 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.019±0.00 N/A N/A N/A N/A
ENST00000583904 N/A N/A N/A N/A N/A N/A N/A N/A 1.706±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00063Q CIL_00063Q_0001 CGP 17:78991717-79049788
CIL_00003F CIL_00003F_0001 CGP 17:79022814-79088599

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005518 IDA collagen binding
GO:0005581 IEA collagen trimer
GO:0005615 IDA extracellular space
GO:0005887 IDA integral component of plasma membrane
GO:0007204 IDA positive regulation of cytosolic calcium ion concentration
GO:0010544 IDA negative regulation of platelet activation
GO:0010628 IDA positive regulation of gene expression
GO:0010906 IEA regulation of glucose metabolic process
GO:0043410 IEA positive regulation of MAPK cascade
GO:0051260 IEA protein homooligomerization
GO:0051897 IEA positive regulation of protein kinase B signaling
GO:0070208 IEA protein heterotrimerization
GO:0090331 IDA negative regulation of platelet aggregation
GO:2000860 IDA positive regulation of aldosterone secretion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053510 c1qtnf1 C1q and tumor necrosis factor related protein 1 protein_coding Danio_rerio
ENSDARG00000088878 c1qtnf1 C1q and tumor necrosis factor related protein 1 protein_coding Danio_rerio
ENSMUSG00000017446 C1qtnf1 C1q and tumor necrosis factor related protein 1 protein_coding Mus_musculus

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