C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: C1q and tumor necrosis factor related protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000017446 C1qtnf1 10090 + 11:118428203-118449963 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000017590 C1qtnf1-002 118428499-118449963 protein_coding
  ENSMUST00000106286 C1qtnf1-001 118433853-118449963 protein_coding
  ENSMUST00000124861 C1qtnf1-003 118428203-118443843 protein_coding
  ENSMUST00000133558 C1qtnf1-004 118443471-118443850 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonMuscleOvaryPlacentaTestisENSMUST00000017590ENSMUST00000106286ENSMUST00000124861
Transcript ID Brain Colon Muscle Ovary Placenta Testis
ENSMUST00000017590 1.047±0.00 N/A 0.267±0.00 6.989±0.00 17.180±13.31 0.330±0.00
ENSMUST00000106286 N/A 1.300±0.00 0.530±0.00 N/A N/A N/A
ENSMUST00000124861 N/A N/A N/A N/A N/A 0.034±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00063Q CIL_00063Q_0002 CGP 11:118406289-118449963
CIL_00003F CIL_00003F_0002 CGP 11:118428203-118489209

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005518 IEA collagen binding
GO:0005581 IEA collagen trimer
GO:0005615 IDA extracellular space
GO:0005887 IEA integral component of plasma membrane
GO:0007204 IEA positive regulation of cytosolic calcium ion concentration
GO:0010544 IEA negative regulation of platelet activation
GO:0010628 IEA positive regulation of gene expression
GO:0010906 IDA regulation of glucose metabolic process
GO:0043410 IDA positive regulation of MAPK cascade
GO:0051260 IDA protein homooligomerization
GO:0051897 IDA positive regulation of protein kinase B signaling
GO:0070208 IPI protein heterotrimerization
GO:0090331 IEA negative regulation of platelet aggregation
GO:2000860 IEA positive regulation of aldosterone secretion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053510 c1qtnf1 C1q and tumor necrosis factor related protein 1 protein_coding Danio_rerio
ENSDARG00000088878 c1qtnf1 C1q and tumor necrosis factor related protein 1 protein_coding Danio_rerio
ENSG00000173918 C1QTNF1 C1q and tumor necrosis factor related protein 1 protein_coding Homo_sapiens

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