C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: C1q and tumor necrosis factor related protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000311661 C1QTNF1-002 ENSG00000173918 9606 + 17:79024261-79049787 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000311661
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000311661 40.271±0.00 79.261±0.00 0.208±0.00 4.034±0.00 17.781±16.85 13.821±0.00 33.186±0.00 14.011±0.00 4.896±3.03 14.515±0.00 3.650±0.00 29.968±5.14 30.415±1.44 11.696±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00063Q CIL_00063Q_0001 CGP 17:78991717-79049788
CIL_00003F CIL_00003F_0001 CGP 17:79022814-79088599

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005518 IDA collagen binding
GO:0005581 IEA collagen trimer
GO:0005615 IDA extracellular space
GO:0005887 IDA integral component of plasma membrane
GO:0007204 IDA positive regulation of cytosolic calcium ion concentration
GO:0010544 IDA negative regulation of platelet activation
GO:0010628 IDA positive regulation of gene expression
GO:0090331 IDA negative regulation of platelet aggregation
GO:2000860 IDA positive regulation of aldosterone secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106286 C1qtnf1-001 protein_coding Mus_musculus 0 660
ENSMUST00000017590 C1qtnf1-002 protein_coding Mus_musculus 0 660
ENSDART00000011705 c1qtnf1-201 protein_coding Danio_rerio 0 311
ENSDART00000139405 c1qtnf1-001 protein_coding Danio_rerio 0 311
ENSDART00000152908 c1qtnf1-001 protein_coding Danio_rerio 0 311

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