C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: desmin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000175084 DES 9606 + 2:219418377-219426739 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000373960 DES-001 219418377-219426739 protein_coding
  ENST00000477226 DES-006 219420045-219423820 retained_intron
  ENST00000483395 DES-008 219425520-219426184 retained_intron
  ENST00000492726 DES-007 219420122-219423843 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373960ENST00000477226ENST00000483395ENST00000492726
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373960 50.222±0.00 612.805±0.00 0.862±0.00 2.425±2.12 192.919±77.81 1920.132±1750.95 2581.500±2223.80 21.678±21.28 338.054±334.55 130.672±124.39 3925.030±2626.97 99.643±95.72 96.137±35.99 146.514±139.77
ENST00000477226 N/A N/A N/A N/A 152.819±0.00 130.472±0.00 335.420±0.00 N/A 477.751±0.00 8.192±0.00 709.806±0.00 6.372±0.00 N/A N/A
ENST00000483395 N/A N/A N/A 0.261±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492726 N/A N/A 1.792±0.00 3.555±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0001 VISTA 2:219106772-219707284
CIL_0006NZ CIL_0006NZ_0001 CGP 2:219373546-219426739
CIL_0006O0 CIL_0006O0_0001 CGP 2:219418377-219498287

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0005856 IEA cytoskeleton
GO:0005882 IEA intermediate filament
GO:0005916 IEA fascia adherens
GO:0006936 TAS muscle contraction
GO:0007010 TAS cytoskeleton organization
GO:0008016 TAS regulation of heart contraction
GO:0008092 IPI cytoskeletal protein binding
GO:0030018 IDA Z disc
GO:0030049 TAS muscle filament sliding
GO:0031594 IEA neuromuscular junction
GO:0042383 IEA sarcolemma
GO:0042802 IPI identical protein binding
GO:0043292 IEA contractile fiber
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005221 desmb desmin b protein_coding Danio_rerio
ENSDARG00000058656 desma desmin a protein_coding Danio_rerio
ENSMUSG00000026208 Des desmin protein_coding Mus_musculus

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