C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: desmin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000477226 DES-006 ENSG00000175084 9606 + 2:219420045-219423820 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartLiverLungMuscleOvaryENST00000477226
Transcript ID Breast Colon Heart Liver Lung Muscle Ovary
ENST00000477226 152.819±0.00 130.472±0.00 335.420±0.00 477.751±0.00 8.192±0.00 709.806±0.00 6.372±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0001 VISTA 2:219106772-219707284
CIL_0006NZ CIL_0006NZ_0001 CGP 2:219373546-219426739
CIL_0006O0 CIL_0006O0_0001 CGP 2:219418377-219498287

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027409 Des-001 protein_coding Mus_musculus 0 989
ENSMUST00000125948 Des-003 retained_intron Mus_musculus 0 800
ENSMUST00000144894 Des-002 retained_intron Mus_musculus 0 217
ENSMUST00000023797 Krt4-201 protein_coding Mus_musculus 4e-21 106

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