C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: desmin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373960 DES-001 ENSG00000175084 9606 + 2:219418377-219426739 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373960
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373960 50.222±0.00 612.805±0.00 0.862±0.00 2.425±2.12 192.919±77.81 1920.132±1750.95 2581.500±2223.80 21.678±21.28 338.054±334.55 130.672±124.39 3925.030±2626.97 99.643±95.72 96.137±35.99 146.514±139.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0001 VISTA 2:219106772-219707284
CIL_0006NZ CIL_0006NZ_0001 CGP 2:219373546-219426739
CIL_0006O0 CIL_0006O0_0001 CGP 2:219418377-219498287

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0005856 IEA cytoskeleton
GO:0005882 IEA intermediate filament
GO:0005916 IEA fascia adherens
GO:0006936 TAS muscle contraction
GO:0007010 TAS cytoskeleton organization
GO:0008016 TAS regulation of heart contraction
GO:0008092 IPI cytoskeletal protein binding
GO:0030018 IDA Z disc
GO:0030049 TAS muscle filament sliding
GO:0031594 IEA neuromuscular junction
GO:0042383 IEA sarcolemma
GO:0042802 IPI identical protein binding
GO:0043292 IEA contractile fiber
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027409 Des-001 protein_coding Mus_musculus 0 2002
ENSMUST00000125948 Des-003 retained_intron Mus_musculus 0 800
ENSDART00000065356 desmb-001 protein_coding Danio_rerio 0 577
ENSMUST00000144894 Des-002 retained_intron Mus_musculus 0 207
ENSDART00000028270 gfap-001 protein_coding Danio_rerio 0 191
ENSMUST00000023797 Krt4-201 protein_coding Mus_musculus 1e-20 106

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