C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LysM, putative peptidoglycan-binding, domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000176018 LYSMD3 9606 - 5:90515611-90529584 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000315948 LYSMD3-002 90515626-90529581 protein_coding
  ENST00000453259 LYSMD3-004 90519433-90529584 nonsense_mediated_decay
  ENST00000500869 LYSMD3-003 90515611-90529561 protein_coding
  ENST00000509384 LYSMD3-001 90518291-90529584 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000315948ENST00000453259ENST00000500869ENST00000509384
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000315948 4.111±0.00 3.637±0.00 2.249±0.00 3.000±0.00 2.630±0.00 4.002±0.77 3.709±0.00 4.728±3.10 3.000±0.00 3.964±0.00 1.338±0.91 3.634±1.47 2.789±0.12 3.586±0.00
ENST00000453259 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.543±0.00 N/A N/A N/A
ENST00000500869 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.422±0.00
ENST00000509384 N/A N/A 4.220±0.00 N/A 3.780±0.00 3.662±0.00 1.613±0.00 3.000±0.00 2.722±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00037K CIL_00037K_0002 CGP 5:90471748-90529584
CIL_0005KB CIL_0005KB_0002 CGP 5:90515611-91164221

Gene Ontology
GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000024693 lysmd3 LysM, putative peptidoglycan-binding, domain containing 3 protein_coding Danio_rerio
ENSMUSG00000035840 Lysmd3 LysM, putative peptidoglycan-binding, domain containing 3 protein_coding Mus_musculus

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