C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: rotatin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000176225 RTTN 9606 - 18:70003793-70205945 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000255674 RTTN-001 70003793-70205945 protein_coding
  ENST00000578780 RTTN-006 70003804-70020718 protein_coding
  ENST00000579021 RTTN-012 70017591-70019874 processed_transcript
  ENST00000579986 RTTN-009 70017575-70031390 processed_transcript
  ENST00000580034 RTTN-011 70006474-70021160 retained_intron
  ENST00000581161 RTTN-003 70003969-70205700 nonsense_mediated_decay
  ENST00000581583 RTTN-002 70166434-70205726 retained_intron
  ENST00000581709 RTTN-008 70091545-70109693 processed_transcript
  ENST00000583043 RTTN-004 70003804-70197686 nonsense_mediated_decay
  ENST00000583765 RTTN-010 70019502-70028757 processed_transcript
  ENST00000584659 RTTN-007 70150121-70176746 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000255674ENST00000578780ENST00000581161ENST00000581583ENST00000583043
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000255674 N/A N/A N/A 0.088±0.00 0.071±0.00 0.069±0.00 N/A N/A N/A 0.072±0.00 0.072±0.00 0.617±0.07 0.523±0.01 2.263±1.67
ENST00000578780 N/A 1.262±0.00 N/A N/A 0.681±0.00 N/A N/A N/A 0.575±0.00 0.703±0.00 N/A N/A 0.943±0.00 N/A
ENST00000581161 0.092±0.00 0.487±0.00 1.179±0.00 0.324±0.00 0.379±0.31 0.139±0.00 0.204±0.00 0.163±0.00 0.574±0.00 0.484±0.00 0.477±0.25 1.474±0.00 0.265±0.00 N/A
ENST00000581583 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.151±0.00 N/A N/A N/A
ENST00000583043 0.204±0.00 N/A N/A N/A 0.168±0.00 0.263±0.00 0.227±0.00 0.164±0.00 N/A 0.172±0.00 N/A 0.488±0.16 0.336±0.01 0.976±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000AS CIL_0000AS_0002 CGP 18:69831158-70205945
CIL_000019 CIL_000019_0002 CGP 18:70003793-70330200

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005488 IEA binding
GO:0005737 IEA cytoplasm
GO:0007368 IEA determination of left/right symmetry
GO:0036064 IDA ciliary basal body

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004131 rttn rotatin protein_coding Danio_rerio
ENSMUSG00000023066 Rttn rotatin protein_coding Mus_musculus

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