C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000019_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000004131-ENSDARG00000058565 CGP 7955 24:15036261-15182908
GeneTranscriptPositionBiotype
ENSDARG00000004131 (rttn)
rotatin 		ENSDART00000006930 (rttn-201) 15036261-15167157 protein_coding
ENSDART00000142473 (rttn-001) 15036286-15063791 protein_coding
ENSDART00000145978 (rttn-002) 15104662-15112547 protein_coding
ENSDARG00000058565 (BX640518.1)
Uncharacterized protein 		ENSDART00000081449 (BX640518.1-201) 15181349-15182908 protein_coding
CIL_000019_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000176225-ENSG00000170677 CGP 9606 18:70003793-70330200
GeneTranscriptPositionBiotype
ENSG00000170677 (SOCS6)
suppressor of cytokine signaling 6 		ENST00000397942 (SOCS6-001) 70288901-70330200 protein_coding
ENST00000578377 (SOCS6-003) 70296599-70325351 protein_coding
ENST00000582322 (SOCS6-002) 70314190-70327116 protein_coding
ENSG00000176225 (RTTN)
rotatin 		ENST00000255674 (RTTN-001) 70003793-70205945 protein_coding
ENST00000578780 (RTTN-006) 70003804-70020718 protein_coding
ENST00000579021 (RTTN-012) 70017591-70019874 processed_transcript
ENST00000579986 (RTTN-009) 70017575-70031390 processed_transcript
ENST00000580034 (RTTN-011) 70006474-70021160 retained_intron
ENST00000581161 (RTTN-003) 70003969-70205700 nonsense_mediated_decay
ENST00000581583 (RTTN-002) 70166434-70205726 retained_intron
ENST00000581709 (RTTN-008) 70091545-70109693 processed_transcript
ENST00000583043 (RTTN-004) 70003804-70197686 nonsense_mediated_decay
ENST00000583765 (RTTN-010) 70019502-70028757 processed_transcript
ENST00000584659 (RTTN-007) 70150121-70176746 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000019_0001ENSDARG00000004131ENSDART00000006930ENSDART00000142473ENSDART00000145978ENSDARG00000058565ENSDART00000081449CIL_000019_0002ENSG00000170677ENST00000397942ENST00000578377ENST00000582322ENSG00000176225ENST00000255674ENST00000578780ENST00000579021ENST00000579986ENST00000580034ENST00000581161ENST00000581583ENST00000581709ENST00000583043ENST00000583765ENST00000584659
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000019_0001ENSDARG00000004131ENSDART00000006930ENSDART00000142473ENSDARG00000058565ENSDART00000081449CIL_000019_0002ENSG00000170677ENST00000397942ENST00000578377ENST00000582322ENSG00000176225ENST00000255674ENST00000578780ENST00000581161ENST00000581583ENST00000583043
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000004131 ENSDART00000006930 N/A N/A N/A 0.220±0.20 N/A N/A 0.723±0.72 0.597±0.19 N/A N/A 1.483±0.00 N/A N/A N/A
ENSDART00000142473 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.444±0.00 N/A N/A N/A
ENSDART00000145978 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000058565 ENSDART00000081449 N/A N/A N/A 0.743±0.00 N/A N/A 1.009±0.01 0.351±0.00 0.321±0.00 N/A 0.632±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000170677 ENST00000397942 1.328±0.00 1.087±0.00 N/A 1.608±0.60 1.919±1.09 2.122±1.04 1.732±0.40 3.124±0.00 1.958±0.38 0.726±0.25 4.608±0.00 2.126±1.10 1.240±0.01 1.977±0.00
ENST00000578377 N/A N/A 3.130±0.00 N/A N/A N/A N/A 7.517±0.00 N/A N/A 2.249±0.00 N/A N/A N/A
ENST00000582322 1.155±0.00 0.648±0.00 N/A 2.481±0.30 1.327±0.00 4.656±0.00 1.400±0.36 1.504±0.00 3.078±0.00 3.617±0.00 0.801±0.00 1.958±1.01 1.564±0.38 1.247±0.23
ENSG00000176225 ENST00000255674 N/A N/A N/A 0.088±0.00 0.071±0.00 0.069±0.00 N/A N/A N/A 0.072±0.00 0.072±0.00 0.617±0.07 0.523±0.01 2.263±1.67
ENST00000578780 N/A 1.262±0.00 N/A N/A 0.681±0.00 N/A N/A N/A 0.575±0.00 0.703±0.00 N/A N/A 0.943±0.00 N/A
ENST00000579021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579986 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580034 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581161 0.092±0.00 0.487±0.00 1.179±0.00 0.324±0.00 0.379±0.31 0.139±0.00 0.204±0.00 0.163±0.00 0.574±0.00 0.484±0.00 0.477±0.25 1.474±0.00 0.265±0.00 N/A
ENST00000581583 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.151±0.00 N/A N/A N/A
ENST00000581709 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583043 0.204±0.00 N/A N/A N/A 0.168±0.00 0.263±0.00 0.227±0.00 0.164±0.00 N/A 0.172±0.00 N/A 0.488±0.16 0.336±0.01 0.976±0.00
ENST00000583765 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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