C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin beta 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000177839 PCDHB9 9606 + 5:141187127-141191541 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000316105 PCDHB9-001 141187127-141191541 protein_coding
  ENST00000623266 PCDHB9-002 141187127-141188808 processed_transcript
  ENST00000624909 PCDHB9-003 141187207-141188747 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLiverOvaryPlacentaENST00000316105ENST00000624909
Transcript ID Adrenal Breast Colon Kidney Liver Ovary Placenta
ENST00000316105 0.416±0.00 0.671±0.00 0.556±0.00 0.410±0.00 0.045±0.00 0.393±0.20 0.179±0.04
ENST00000624909 N/A N/A N/A N/A N/A 1.064±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000D CGP 5:141187127-141195642

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007268 TAS synaptic transmission
GO:0007416 TAS synapse assembly
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0016339 NAS calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010684 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000071889 pcdh2g8 protocadherin 2 gamma 8 protein_coding Danio_rerio
ENSDARG00000071891 pcdh2g6 protocadherin 2 gamma 6 protein_coding Danio_rerio
ENSDARG00000071892 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000074738 pcdh2g9 protocadherin 2 gamma 9 protein_coding Danio_rerio
ENSDARG00000077343 CT573264.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000077867 CT573264.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000079937 pcdh2g5 protocadherin 2 gamma 5 protein_coding Danio_rerio
ENSMUSG00000048347 Pcdhb18 protocadherin beta 18 protein_coding Mus_musculus

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