C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000316105 PCDHB9-001 ENSG00000177839 9606 + 5:141187127-141191541 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLiverOvaryPlacentaENST00000316105
Transcript ID Adrenal Breast Colon Kidney Liver Ovary Placenta
ENST00000316105 0.416±0.00 0.671±0.00 0.556±0.00 0.410±0.00 0.045±0.00 0.393±0.20 0.179±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000D CGP 5:141187127-141195642

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007268 TAS synaptic transmission
GO:0007416 TAS synapse assembly
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0016339 NAS calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000055949 Pcdhb18-201 protein_coding Mus_musculus 0 1831
ENSMUST00000056522 Pcdhb2-201 protein_coding Mus_musculus 0 905
ENSMUST00000053073 Pcdhb11-201 protein_coding Mus_musculus 0 832
ENSMUST00000057228 Pcdhb9-201 protein_coding Mus_musculus 0 832
ENSMUST00000055495 Pcdhb12-201 protein_coding Mus_musculus 0 804
ENSMUST00000051126 Pcdhb10-201 protein_coding Mus_musculus 0 758

Loading