C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: copine VII
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000178773 CPNE7 9606 + 16:89575768-89597246 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000268720 CPNE7-002 89575768-89597246 protein_coding
  ENST00000319518 CPNE7-001 89575791-89597246 protein_coding
  ENST00000525982 CPNE7-003 89575782-89583714 nonsense_mediated_decay
  ENST00000526232 CPNE7-006 89595576-89596849 protein_coding
  ENST00000529800 CPNE7-004 89587043-89595423 protein_coding
  ENST00000532500 CPNE7-005 89584821-89587732 retained_intron
  ENST00000564421 CPNE7-009 89595770-89596845 processed_transcript
  ENST00000566398 CPNE7-008 89594100-89596859 processed_transcript
  ENST00000568977 CPNE7-010 89588804-89596816 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000319518ENST00000525982ENST00000526232ENST00000529800ENST00000532500ENST00000564421ENST00000566398ENST00000568977
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000319518 0.126±0.00 N/A 2.610±2.34 0.230±0.02 0.223±0.00 N/A 1.031±0.00 0.119±0.00 0.154±0.00 0.153±0.00 0.043±0.00 2.805±0.64
ENST00000525982 N/A N/A N/A N/A N/A 0.082±0.00 N/A N/A N/A 0.887±0.00 N/A N/A
ENST00000526232 0.223±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.740±0.00 0.172±0.01 N/A
ENST00000529800 N/A 0.131±0.00 N/A N/A N/A N/A N/A 0.152±0.00 N/A 0.529±0.00 N/A N/A
ENST00000532500 N/A 0.163±0.00 N/A 0.374±0.00 N/A N/A N/A N/A N/A 3.672±3.86 0.083±0.02 7.190±0.00
ENST00000564421 N/A N/A N/A 0.483±0.00 N/A N/A N/A N/A N/A 0.682±0.00 N/A N/A
ENST00000566398 N/A N/A N/A 0.167±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568977 N/A 0.124±0.00 N/A 0.229±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HA CIL_0008HA_0001 VISTA 16:89018329-89621235
CIL_0006AP CIL_0006AP_0002 CGP 16:89560657-89597246

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 TAS transporter activity
GO:0005515 IEA protein binding
GO:0006629 TAS lipid metabolic process
GO:0006810 TAS transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037084 CPNE7 copine VII protein_coding Danio_rerio
ENSMUSG00000034796 Cpne7 copine VII protein_coding Mus_musculus

Loading