C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: regulator of chromosome condensation 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000180198 RCC1 9606 + 1:28505943-28539300 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000373831 RCC1-004 28518257-28538164 protein_coding
  ENST00000373832 RCC1-001 28518136-28538983 protein_coding
  ENST00000373833 RCC1-003 28506057-28539300 protein_coding
  ENST00000398958 RCC1-201 28505943-28539196 protein_coding
  ENST00000411533 RCC1-006 28518266-28536875 protein_coding
  ENST00000419074 RCC1-005 28510077-28536026 protein_coding
  ENST00000427469 RCC1-012 28505990-28535899 protein_coding
  ENST00000429051 RCC1-009 28531935-28535905 processed_transcript
  ENST00000430407 RCC1-008 28518695-28536293 protein_coding
  ENST00000434290 RCC1-007 28506056-28535919 protein_coding
  ENST00000478232 RCC1-010 28536093-28537898 retained_intron
  ENST00000486790 RCC1-011 28518626-28531818 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373831ENST00000373832ENST00000373833ENST00000398958ENST00000419074ENST00000429051ENST00000478232
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.627±0.00 15.589±0.00
ENST00000373832 5.793±0.00 9.624±0.00 0.250±0.00 4.349±0.00 9.389±0.00 1.768±0.00 6.262±0.00 7.791±0.00 6.591±0.00 6.110±0.00 12.596±7.47 6.329±1.00 15.556±4.95
ENST00000373833 N/A N/A N/A 2.080±0.00 N/A N/A 1.270±0.00 N/A N/A N/A 2.410±0.00 N/A N/A
ENST00000398958 N/A N/A N/A N/A N/A 0.237±0.00 N/A 1.747±0.00 N/A N/A N/A N/A N/A
ENST00000419074 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.998±0.00
ENST00000429051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.795±0.00 54.859±0.00
ENST00000478232 N/A N/A 1.465±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000082 IMP G1/S transition of mitotic cell cycle
GO:0000790 IDA nuclear chromatin
GO:0000794 IDA condensed nuclear chromosome
GO:0003682 IDA chromatin binding
GO:0005087 IDA Ran guanyl-nucleotide exchange factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0007052 IDA mitotic spindle organization
GO:0007059 IMP chromosome segregation
GO:0007067 IEA mitotic nuclear division
GO:0007088 IDA regulation of mitosis
GO:0016032 TAS viral process
GO:0031492 IDA nucleosomal DNA binding
GO:0031965 IDA nuclear membrane
GO:0032853 IDA positive regulation of Ran GTPase activity
GO:0042393 IDA histone binding
GO:0051225 IMP spindle assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037158 rcc1 regulator of chromosome condensation 1 protein_coding Danio_rerio
ENSMUSG00000028896 Rcc1 regulator of chromosome condensation 1 protein_coding Mus_musculus

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