C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: regulator of chromosome condensation 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373832 RCC1-001 ENSG00000180198 9606 + 1:28518136-28538983 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373832
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373832 5.793±0.00 9.624±0.00 0.250±0.00 4.349±0.00 9.389±0.00 1.768±0.00 6.262±0.00 7.791±0.00 6.591±0.00 6.110±0.00 12.596±7.47 6.329±1.00 15.556±4.95

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000082 IMP G1/S transition of mitotic cell cycle
GO:0000790 IDA nuclear chromatin
GO:0000794 IDA condensed nuclear chromosome
GO:0003682 IDA chromatin binding
GO:0005087 IDA Ran guanyl-nucleotide exchange factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0007052 IDA mitotic spindle organization
GO:0007059 IMP chromosome segregation
GO:0007067 IEA mitotic nuclear division
GO:0007088 IDA regulation of mitosis
GO:0016032 TAS viral process
GO:0031492 IDA nucleosomal DNA binding
GO:0031965 IDA nuclear membrane
GO:0032853 IDA positive regulation of Ran GTPase activity
GO:0042393 IDA histone binding
GO:0051225 IMP spindle assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000084250 Rcc1-001 protein_coding Mus_musculus 0 1711
ENSMUST00000105951 Rcc1-003 protein_coding Mus_musculus 0 1633
ENSMUST00000030726 Rcc1-002 protein_coding Mus_musculus 0 1511
ENSMUST00000155194 Rcc1-009 processed_transcript Mus_musculus 0 497
ENSMUST00000155129 Rcc1-004 protein_coding Mus_musculus 0 492
ENSMUST00000131307 Rcc1-006 retained_intron Mus_musculus 3e-36 158
ENSMUST00000156710 Rcc1-007 retained_intron Mus_musculus 4e-35 154
ENSMUST00000137238 Rcc1-008 retained_intron Mus_musculus 3e-26 124

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