C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: regulator of chromosome condensation 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028896 Rcc1 10090 - 4:132331919-132353605 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030726 Rcc1-002 132331923-132345705 protein_coding
  ENSMUST00000084250 Rcc1-001 132331919-132345747 protein_coding
  ENSMUST00000105951 Rcc1-003 132331923-132351636 protein_coding
  ENSMUST00000131307 Rcc1-006 132338715-132345701 retained_intron
  ENSMUST00000137238 Rcc1-008 132338961-132345357 retained_intron
  ENSMUST00000155129 Rcc1-004 132337823-132353605 protein_coding
  ENSMUST00000155194 Rcc1-009 132337656-132339932 processed_transcript
  ENSMUST00000156710 Rcc1-007 132339491-132345692 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030726ENSMUST00000084250ENSMUST00000105951ENSMUST00000155194
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030726 1.579±0.65 N/A 1.142±0.00 N/A N/A N/A 0.369±0.00 0.986±0.22 2.416±2.12 N/A 1.353±0.19 1.840±0.30 4.336±2.62 7.636±0.00
ENSMUST00000084250 2.085±0.16 N/A 2.058±0.33 4.745±2.82 2.190±0.00 1.703±0.37 0.549±0.18 1.552±0.76 13.077±8.35 1.159±0.00 2.470±0.77 3.252±1.69 10.677±7.40 N/A
ENSMUST00000105951 N/A 2.337±0.00 N/A N/A N/A N/A N/A N/A 1.141±0.63 0.774±0.00 N/A 4.435±0.00 N/A 42.967±15.57
ENSMUST00000155194 N/A N/A N/A 10.595±0.00 N/A N/A N/A N/A N/A N/A N/A 43.658±0.00 62.786±38.91 324.200±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099N CIL_00099N_0002 VISTA 4:131775516-132379227
CIL_0001RA CIL_0001RA_0002 CGP 4:132331919-132422489

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000082 IEA G1/S transition of mitotic cell cycle
GO:0000790 IEA nuclear chromatin
GO:0000794 IEA condensed nuclear chromosome
GO:0003682 IEA chromatin binding
GO:0005087 IDA Ran guanyl-nucleotide exchange factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0007052 IEA mitotic spindle organization
GO:0007059 IEA chromosome segregation
GO:0007067 IEA mitotic nuclear division
GO:0007088 IEA regulation of mitosis
GO:0031492 IEA nucleosomal DNA binding
GO:0031965 IEA nuclear membrane
GO:0032853 IDA positive regulation of Ran GTPase activity
GO:0042393 IEA histone binding
GO:0051225 IEA spindle assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037158 rcc1 regulator of chromosome condensation 1 protein_coding Danio_rerio
ENSG00000180198 RCC1 regulator of chromosome condensation 1 protein_coding Homo_sapiens

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