C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: orofacial cleft 1 candidate 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000181355 OFCC1 9606 - 6:9596110-10211608 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000316020 OFCC1-201 9896717-9933436 protein_coding
  ENST00000460066 OFCC1-007 9750251-9939349 processed_transcript
  ENST00000460363 OFCC1-001 9707762-9939319 protein_coding
  ENST00000462111 OFCC1-018 10060702-10211540 processed_transcript
  ENST00000466385 OFCC1-008 9896866-9939328 processed_transcript
  ENST00000469421 OFCC1-022 9596110-9599793 processed_transcript
  ENST00000469426 OFCC1-005 9809745-9933281 nonsense_mediated_decay
  ENST00000469656 OFCC1-019 9819162-9908520 nonsense_mediated_decay
  ENST00000472329 OFCC1-003 9896711-10060765 processed_transcript
  ENST00000481704 OFCC1-017 9939289-10211608 protein_coding
  ENST00000485268 OFCC1-004 9939289-10114774 protein_coding
  ENST00000486246 OFCC1-009 9840322-9933289 nonsense_mediated_decay
  ENST00000487015 OFCC1-002 9705425-9933281 nonsense_mediated_decay
  ENST00000491508 OFCC1-006 9900413-9977599 protein_coding
  ENST00000492094 OFCC1-021 9596290-9939328 nonsense_mediated_decay
  ENST00000492169 OFCC1-010 9707933-9933267 protein_coding
  ENST00000611763 OFCC1-202 9896717-9933436 protein_coding
  ENST00000622909 OFCC1-203 9896866-9939328 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastHeartLiverMuscleOvaryPlacentaTestisENST00000460066ENST00000460363ENST00000462111ENST00000469421ENST00000469426ENST00000469656ENST00000485268ENST00000487015ENST00000492094ENST00000492169
Transcript ID Adrenal Bladder Brain Breast Heart Liver Muscle Ovary Placenta Testis
ENST00000460066 N/A N/A N/A N/A N/A N/A N/A 0.275±0.00 N/A N/A
ENST00000460363 N/A N/A N/A N/A N/A N/A N/A 0.214±0.00 N/A 0.057±0.00
ENST00000462111 N/A N/A N/A N/A N/A N/A N/A N/A 0.069±0.00 N/A
ENST00000469421 0.024±0.00 0.676±0.00 0.098±0.00 0.092±0.00 0.047±0.00 N/A 0.022±0.00 0.090±0.00 N/A 0.082±0.00
ENST00000469426 N/A N/A N/A N/A N/A 0.045±0.00 N/A 0.163±0.00 N/A N/A
ENST00000469656 N/A N/A N/A N/A N/A N/A N/A 0.038±0.00 N/A N/A
ENST00000485268 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.232±0.00
ENST00000487015 N/A N/A N/A N/A N/A N/A N/A N/A 0.040±0.00 N/A
ENST00000492094 N/A 0.017±0.00 N/A N/A N/A N/A N/A 0.108±0.07 N/A 0.036±0.00
ENST00000492169 N/A N/A N/A N/A N/A 0.598±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007NC CIL_0007NC_0001 UCNEbase 6:8153140-10408054
CIL_000381 CIL_000381_0001 CGP 6:8413068-10211608

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0005829 IEA cytosol
GO:0015630 IEA microtubule cytoskeleton
GO:0048471 IEA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089100 OFCC1 (2 of 2) orofacial cleft 1 candidate 1 protein_coding Danio_rerio
ENSMUSG00000047094 Ofcc1 orofacial cleft 1 candidate 1 protein_coding Mus_musculus

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