| Source ID |
Type |
Tax ID |
Position |
| TFAP2A |
UCNEbase |
7955 |
Zv9_NA822:54938-55292  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007NC_0007 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007NC_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NC_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NC_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NC_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NC_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000124786' => 'solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B3',
'ENSG00000137203' => 'transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)',
'ENSG00000181355' => 'orofacial cleft 1 candidate 1',
'ENSG00000216368' => null,
'ENSG00000216781' => null,
'ENSG00000221583' => 'RNA, U6atac small nuclear 21, pseudogene',
'ENSG00000225775' => null,
'ENSG00000229765' => null,
'ENSG00000230939' => null,
'ENSG00000232234' => null,
'ENSG00000234763' => null,
'ENSG00000251164' => 'hepatocellular carcinoma up-regulated long non-coding RNA',
'ENSG00000275271' => null,
'ENSG00000276019' => 'Highly up-regulated in liver cancer conserved region',
'ENSMUSG00000021359' => 'transcription factor AP-2, alpha',
'ENSMUSG00000021432' => 'solute carrier family 35, member B3',
'ENSMUSG00000047094' => 'orofacial cleft 1 candidate 1',
'ENSMUSG00000055732' => 'predicted gene 9979',
'ENSMUSG00000065256' => 'predicted gene, 23972',
'ENSMUSG00000087909' => 'predicted gene, 22035',
'ENSMUSG00000096932' => 'RIKEN cDNA 5033403F01 gene',
'ENSMUSG00000097151' => 'predicted gene, 26514',
'ENSDARG00000045437' => 'solute carrier family 35, member B3',
'ENSDARG00000059279' => 'transcription factor AP-2 alpha',
'ENSDARG00000089100' => 'orofacial cleft 1 candidate 1',
'ENSDARG00000074416' => null
),
'gene_name_arr' => array(
'ENSG00000124786' => 'SLC35B3',
'ENSG00000137203' => 'TFAP2A',
'ENSG00000181355' => 'OFCC1',
'ENSG00000216368' => 'RP3-486D24.1',
'ENSG00000216781' => 'RP1-290I10.2',
'ENSG00000221583' => 'RNU6ATAC21P',
'ENSG00000225775' => 'RP11-354I10.1',
'ENSG00000229765' => 'RP11-339A7.1',
'ENSG00000230939' => 'RP11-314C16.1',
'ENSG00000232234' => 'RP11-203H2.1',
'ENSG00000234763' => 'RP11-203H2.2',
'ENSG00000251164' => 'HULC',
'ENSG00000275271' => 'AL138885.1',
'ENSG00000276019' => 'HULC',
'ENSMUSG00000021359' => 'Tfap2a',
'ENSMUSG00000021432' => 'Slc35b3',
'ENSMUSG00000047094' => 'Ofcc1',
'ENSMUSG00000055732' => 'Gm9979',
'ENSMUSG00000065256' => 'Gm23972',
'ENSMUSG00000087909' => 'Gm22035',
'ENSMUSG00000096932' => '5033403F01Rik',
'ENSMUSG00000097151' => 'Gm26514',
'ENSDARG00000045437' => 'slc35b3',
'ENSDARG00000059279' => 'tfap2a',
'ENSDARG00000089100' => 'OFCC1 (2 of 2)',
'ENSDARG00000074416' => 'OFCC1 (1 of 2)'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 6 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 13 => 'Adrenal',
(int) 25 => 'Bladder',
(int) 37 => 'Brain',
(int) 59 => 'Breast',
(int) 73 => 'Colon',
(int) 84 => 'Heart',
(int) 103 => 'Kidney',
(int) 122 => 'Liver',
(int) 139 => 'Lung',
(int) 151 => 'Muscle',
(int) 163 => 'Ovary',
(int) 182 => 'Placenta',
(int) 201 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 68,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000379660' => array(
'start' => '8413068',
'end' => '8435483',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SLC35B3-001'
),
'ENST00000319516' => array(
'start' => '10397872',
'end' => '10419638',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-003'
),
'ENST00000379604' => array(
'start' => '10396683',
'end' => '10415237',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-201'
),
'ENST00000379608' => array(
'start' => '10397915',
'end' => '10412374',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-005'
),
'ENST00000379613' => array(
'start' => '10396677',
'end' => '10415248',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-001'
),
'ENST00000461628' => array(
'start' => '10393186',
'end' => '10404594',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-017'
),
'ENST00000462727' => array(
'start' => '10406794',
'end' => '10410942',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFAP2A-014'
),
'ENST00000464323' => array(
'start' => '10409086',
'end' => '10419554',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TFAP2A-006'
),
'ENST00000465858' => array(
'start' => '10409997',
'end' => '10412879',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-016'
),
'ENST00000466073' => array(
'start' => '10398602',
'end' => '10414985',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-010'
),
'ENST00000473652' => array(
'start' => '10404668',
'end' => '10419659',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFAP2A-013'
),
'ENST00000474952' => array(
'start' => '10406136',
'end' => '10412046',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TFAP2A-012'
),
'ENST00000475264' => array(
'start' => '10400714',
'end' => '10410094',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-018'
),
'ENST00000478375' => array(
'start' => '10402026',
'end' => '10414985',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TFAP2A-002'
),
'ENST00000482890' => array(
'start' => '10398013',
'end' => '10416190',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-007'
),
'ENST00000486038' => array(
'start' => '10418189',
'end' => '10419623',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFAP2A-019'
),
'ENST00000488193' => array(
'start' => '10397915',
'end' => '10415206',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TFAP2A-008'
),
'ENST00000489805' => array(
'start' => '10397410',
'end' => '10412175',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TFAP2A-011'
),
'ENST00000490875' => array(
'start' => '10404621',
'end' => '10417207',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFAP2A-004'
),
'ENST00000497266' => array(
'start' => '10398688',
'end' => '10411018',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFAP2A-015'
),
'ENST00000498450' => array(
'start' => '10402538',
'end' => '10415000',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-009'
),
'ENST00000316020' => array(
'start' => '9896717',
'end' => '9933436',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1-201'
),
'ENST00000460066' => array(
'start' => '9750251',
'end' => '9939349',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OFCC1-007'
),
'ENST00000460363' => array(
'start' => '9707762',
'end' => '9939319',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1-001'
),
'ENST00000462111' => array(
'start' => '10060702',
'end' => '10211540',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OFCC1-018'
),
'ENST00000466385' => array(
'start' => '9896866',
'end' => '9939328',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OFCC1-008'
),
'ENST00000469421' => array(
'start' => '9596110',
'end' => '9599793',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OFCC1-022'
),
'ENST00000469426' => array(
'start' => '9809745',
'end' => '9933281',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'OFCC1-005'
),
'ENST00000469656' => array(
'start' => '9819162',
'end' => '9908520',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'OFCC1-019'
),
'ENST00000472329' => array(
'start' => '9896711',
'end' => '10060765',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OFCC1-003'
),
'ENST00000481704' => array(
'start' => '9939289',
'end' => '10211608',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1-017'
),
'ENST00000485268' => array(
'start' => '9939289',
'end' => '10114774',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1-004'
),
'ENST00000486246' => array(
'start' => '9840322',
'end' => '9933289',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'OFCC1-009'
),
'ENST00000487015' => array(
'start' => '9705425',
'end' => '9933281',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'OFCC1-002'
),
'ENST00000491508' => array(
'start' => '9900413',
'end' => '9977599',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1-006'
),
'ENST00000492094' => array(
'start' => '9596290',
'end' => '9939328',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'OFCC1-021'
),
'ENST00000492169' => array(
'start' => '9707933',
'end' => '9933267',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1-010'
),
'ENST00000611763' => array(
'start' => '9896717',
'end' => '9933436',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1-202'
),
'ENST00000622909' => array(
'start' => '9896866',
'end' => '9939328',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1-203'
),
'ENST00000401715' => array(
'start' => '10118452',
'end' => '10119253',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP3-486D24.1-001'
),
'ENST00000405921' => array(
'start' => '10365593',
'end' => '10366582',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP1-290I10.2-001'
),
'ENST00000408656' => array(
'start' => '10222036',
'end' => '10222161',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6ATAC21P-201'
),
'ENST00000431369' => array(
'start' => '9124221',
'end' => '9161777',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-354I10.1-001'
),
'ENST00000417077' => array(
'start' => '10213881',
'end' => '10214362',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-339A7.1-001'
),
'ENST00000429060' => array(
'start' => '8784178',
'end' => '8785445',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-314C16.1-001'
),
'ENST00000439891' => array(
'start' => '8329655',
'end' => '8342455',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-203H2.1-001'
),
'ENST00000415575' => array(
'start' => '8341937',
'end' => '8343021',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-203H2.2-001'
),
'ENST00000503668' => array(
'start' => '8652137',
'end' => '8653846',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'HULC-001'
),
'ENST00000610392' => array(
'start' => '10312350',
'end' => '10312458',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AL138885.1-201'
),
'ENST00000612720' => array(
'start' => '8653558',
'end' => '8653797',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'HULC.1-201'
),
'ENSMUST00000021787' => array(
'start' => '40715675',
'end' => '40730418',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tfap2a-201'
),
'ENSMUST00000110193' => array(
'start' => '40715675',
'end' => '40733823',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tfap2a-202'
),
'ENSMUST00000021870' => array(
'start' => '38932140',
'end' => '38960875',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Slc35b3-201'
),
'ENSMUST00000167513' => array(
'start' => '38932140',
'end' => '38960537',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Slc35b3-202'
),
'ENSMUST00000054635' => array(
'start' => '40001882',
'end' => '40288011',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ofcc1-201'
),
'ENSMUST00000069457' => array(
'start' => '40704005',
'end' => '40707949',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm9979-201'
),
'ENSMUST00000083322' => array(
'start' => '39858863',
'end' => '39859027',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm23972-201'
),
'ENSMUST00000157284' => array(
'start' => '38898360',
'end' => '38898587',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm22035-201'
),
'ENSMUST00000181376' => array(
'start' => '38960619',
'end' => '38966299',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '5033403F01Rik-201'
),
'ENSMUST00000181087' => array(
'start' => '38945543',
'end' => '38951313',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26514-201'
),
'ENSDART00000149025' => array(
'start' => '8288604',
'end' => '8305014',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'slc35b3-002'
),
'ENSDART00000149662' => array(
'start' => '8301953',
'end' => '8304947',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'slc35b3-003'
),
'ENSDART00000150055' => array(
'start' => '8288596',
'end' => '8307832',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'slc35b3-001'
),
'ENSDART00000082346' => array(
'start' => '8521277',
'end' => '8529215',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2a-201'
),
'ENSDART00000082349' => array(
'start' => '8521274',
'end' => '8530614',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2a-202'
),
'ENSDART00000082351' => array(
'start' => '8521274',
'end' => '8532116',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2a-203'
),
'ENSDART00000125114' => array(
'start' => '125961',
'end' => '205798',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1 (2 of 2)-201'
),
'ENSDART00000112094' => array(
'start' => '22627',
'end' => '70442',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1 (1 of 2)-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007NC_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NC_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NC_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NC_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NC_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007NC_0001' => array(
'genes_in_region' => array(
'ENSG00000124786' => array(
[maximum depth reached]
),
'ENSG00000137203' => array(
[maximum depth reached]
),
'ENSG00000216368' => array(
[maximum depth reached]
),
'ENSG00000216781' => array(
[maximum depth reached]
),
'ENSG00000225775' => array(
[maximum depth reached]
),
'ENSG00000229765' => array(
[maximum depth reached]
),
'ENSG00000230939' => array(
[maximum depth reached]
),
'ENSG00000232234' => array(
[maximum depth reached]
),
'ENSG00000234763' => array(
[maximum depth reached]
),
'ENSG00000251164' => array(
[maximum depth reached]
),
'ENSG00000275271' => array(
[maximum depth reached]
),
'ENSG00000276019' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Bladder',
(int) 15 => 'Adipose',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 22 => 'Adipose',
(int) 23 => 'Bladder',
(int) 24 => 'Lung',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Liver',
(int) 29 => 'Bladder',
(int) 30 => 'Adipose',
(int) 31 => 'Colon',
(int) 32 => 'Ovary',
(int) 33 => 'Placenta',
(int) 34 => 'Lung',
(int) 35 => 'Ovary',
(int) 36 => 'Testis',
(int) 37 => 'Breast',
(int) 38 => 'Colon',
(int) 39 => 'Placenta',
(int) 40 => 'Testis',
(int) 41 => 'Adrenal',
(int) 42 => 'Heart',
(int) 43 => 'Breast',
(int) 44 => 'Bladder',
(int) 45 => 'Adrenal',
(int) 46 => 'Colon',
(int) 47 => 'Heart',
(int) 48 => 'Kidney',
(int) 49 => 'Ovary',
(int) 50 => 'Placenta',
(int) 51 => 'Testis',
(int) 52 => 'Liver',
(int) 53 => 'Heart',
(int) 54 => 'Testis',
(int) 55 => 'Ovary',
(int) 56 => 'Ovary',
(int) 57 => 'Testis',
(int) 58 => 'Placenta',
(int) 59 => 'Adrenal',
(int) 60 => 'Bladder',
(int) 61 => 'Brain',
(int) 62 => 'Breast',
(int) 63 => 'Heart',
(int) 64 => 'Muscle',
(int) 65 => 'Ovary',
(int) 66 => 'Testis',
(int) 67 => 'Liver',
(int) 68 => 'Ovary',
(int) 69 => 'Ovary',
(int) 70 => 'Testis',
(int) 71 => 'Placenta',
(int) 72 => 'Bladder',
(int) 73 => 'Ovary',
(int) 74 => 'Testis',
(int) 75 => 'Liver',
(int) 76 => 'Adrenal',
(int) 77 => 'Brain',
(int) 78 => 'Breast',
(int) 79 => 'Muscle',
(int) 80 => 'Brain',
(int) 81 => 'Kidney',
(int) 82 => 'Testis',
(int) 83 => 'Adipose',
(int) 84 => 'Colon',
(int) 85 => 'Heart',
(int) 86 => 'Lung',
(int) 87 => 'Placenta',
(int) 88 => 'Testis',
(int) 89 => 'Adipose',
(int) 90 => 'Adrenal',
(int) 91 => 'Brain',
(int) 92 => 'Breast',
(int) 93 => 'Colon',
(int) 94 => 'Heart',
(int) 95 => 'Kidney',
(int) 96 => 'Lung',
(int) 97 => 'Ovary',
(int) 98 => 'Placenta',
(int) 99 => 'Testis',
(int) 100 => 'Kidney',
(int) 101 => 'Placenta',
(int) 102 => 'Testis',
(int) 103 => 'Adipose',
(int) 104 => 'Colon',
(int) 105 => 'Placenta',
(int) 106 => 'Testis',
(int) 107 => 'Breast',
(int) 108 => 'Heart',
(int) 109 => 'Kidney',
(int) 110 => 'Liver',
(int) 111 => 'Lung',
(int) 112 => 'Ovary',
(int) 113 => 'Adipose',
(int) 114 => 'Adrenal',
(int) 115 => 'Brain',
(int) 116 => 'Breast',
(int) 117 => 'Heart',
(int) 118 => 'Kidney',
(int) 119 => 'Liver',
(int) 120 => 'Lung',
(int) 121 => 'Ovary',
(int) 122 => 'Testis',
(int) 123 => 'Adrenal',
(int) 124 => 'Brain',
(int) 125 => 'Liver',
(int) 126 => 'Placenta',
(int) 127 => 'Testis'
)
),
'CIL_0007NC_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000021359' => array(
[maximum depth reached]
),
'ENSMUSG00000021432' => array(
[maximum depth reached]
),
'ENSMUSG00000047094' => array(
[maximum depth reached]
),
'ENSMUSG00000055732' => array(
[maximum depth reached]
),
'ENSMUSG00000087909' => array(
[maximum depth reached]
),
'ENSMUSG00000096932' => array(
[maximum depth reached]
),
'ENSMUSG00000097151' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Kidney',
(int) 5 => 'Lung',
(int) 6 => 'Placenta',
(int) 7 => 'Testis',
(int) 8 => 'Adipose',
(int) 9 => 'Adrenal',
(int) 10 => 'Bladder',
(int) 11 => 'Brain',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Heart',
(int) 15 => 'Kidney',
(int) 16 => 'Liver',
(int) 17 => 'Lung',
(int) 18 => 'Muscle',
(int) 19 => 'Ovary',
(int) 20 => 'Placenta',
(int) 21 => 'Testis',
(int) 22 => 'Adrenal',
(int) 23 => 'Kidney',
(int) 24 => 'Adipose',
(int) 25 => 'Adrenal',
(int) 26 => 'Bladder',
(int) 27 => 'Brain',
(int) 28 => 'Breast',
(int) 29 => 'Colon',
(int) 30 => 'Heart',
(int) 31 => 'Kidney',
(int) 32 => 'Liver',
(int) 33 => 'Lung',
(int) 34 => 'Muscle',
(int) 35 => 'Ovary',
(int) 36 => 'Placenta',
(int) 37 => 'Testis',
(int) 38 => 'Adipose',
(int) 39 => 'Bladder',
(int) 40 => 'Brain',
(int) 41 => 'Breast',
(int) 42 => 'Kidney',
(int) 43 => 'Liver',
(int) 44 => 'Lung',
(int) 45 => 'Muscle',
(int) 46 => 'Ovary',
(int) 47 => 'Placenta',
(int) 48 => 'Testis',
(int) 49 => 'Bladder',
(int) 50 => 'Brain',
(int) 51 => 'Placenta',
(int) 52 => 'Testis',
(int) 53 => 'Brain',
(int) 54 => 'Testis',
(int) 55 => 'Adipose',
(int) 56 => 'Adrenal',
(int) 57 => 'Bladder',
(int) 58 => 'Brain',
(int) 59 => 'Breast',
(int) 60 => 'Colon',
(int) 61 => 'Heart',
(int) 62 => 'Kidney',
(int) 63 => 'Liver',
(int) 64 => 'Lung',
(int) 65 => 'Muscle',
(int) 66 => 'Ovary',
(int) 67 => 'Placenta',
(int) 68 => 'Testis'
)
),
'CIL_0007NC_0003' => array(
'genes_in_region' => array(
'ENSDARG00000045437' => array(
[maximum depth reached]
),
'ENSDARG00000059279' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Muscle',
(int) 10 => 'Brain',
(int) 11 => 'Heart',
(int) 12 => 'Muscle',
(int) 13 => 'Brain',
(int) 14 => 'Heart',
(int) 15 => 'Liver',
(int) 16 => 'Brain',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver'
)
),
'CIL_0007NC_0004' => array(
'genes_in_region' => array(
'ENSDARG00000089100' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Muscle'
)
),
'CIL_0007NC_0005' => array(
'genes_in_region' => array(
'ENSDARG00000074416' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Muscle'
)
)
)
$gene_desc_arr = array(
'ENSG00000124786' => 'solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B3',
'ENSG00000137203' => 'transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)',
'ENSG00000181355' => 'orofacial cleft 1 candidate 1',
'ENSG00000216368' => null,
'ENSG00000216781' => null,
'ENSG00000221583' => 'RNA, U6atac small nuclear 21, pseudogene',
'ENSG00000225775' => null,
'ENSG00000229765' => null,
'ENSG00000230939' => null,
'ENSG00000232234' => null,
'ENSG00000234763' => null,
'ENSG00000251164' => 'hepatocellular carcinoma up-regulated long non-coding RNA',
'ENSG00000275271' => null,
'ENSG00000276019' => 'Highly up-regulated in liver cancer conserved region',
'ENSMUSG00000021359' => 'transcription factor AP-2, alpha',
'ENSMUSG00000021432' => 'solute carrier family 35, member B3',
'ENSMUSG00000047094' => 'orofacial cleft 1 candidate 1',
'ENSMUSG00000055732' => 'predicted gene 9979',
'ENSMUSG00000065256' => 'predicted gene, 23972',
'ENSMUSG00000087909' => 'predicted gene, 22035',
'ENSMUSG00000096932' => 'RIKEN cDNA 5033403F01 gene',
'ENSMUSG00000097151' => 'predicted gene, 26514',
'ENSDARG00000045437' => 'solute carrier family 35, member B3',
'ENSDARG00000059279' => 'transcription factor AP-2 alpha',
'ENSDARG00000089100' => 'orofacial cleft 1 candidate 1',
'ENSDARG00000074416' => null
)
$gene_name_arr = array(
'ENSG00000124786' => 'SLC35B3',
'ENSG00000137203' => 'TFAP2A',
'ENSG00000181355' => 'OFCC1',
'ENSG00000216368' => 'RP3-486D24.1',
'ENSG00000216781' => 'RP1-290I10.2',
'ENSG00000221583' => 'RNU6ATAC21P',
'ENSG00000225775' => 'RP11-354I10.1',
'ENSG00000229765' => 'RP11-339A7.1',
'ENSG00000230939' => 'RP11-314C16.1',
'ENSG00000232234' => 'RP11-203H2.1',
'ENSG00000234763' => 'RP11-203H2.2',
'ENSG00000251164' => 'HULC',
'ENSG00000275271' => 'AL138885.1',
'ENSG00000276019' => 'HULC',
'ENSMUSG00000021359' => 'Tfap2a',
'ENSMUSG00000021432' => 'Slc35b3',
'ENSMUSG00000047094' => 'Ofcc1',
'ENSMUSG00000055732' => 'Gm9979',
'ENSMUSG00000065256' => 'Gm23972',
'ENSMUSG00000087909' => 'Gm22035',
'ENSMUSG00000096932' => '5033403F01Rik',
'ENSMUSG00000097151' => 'Gm26514',
'ENSDARG00000045437' => 'slc35b3',
'ENSDARG00000059279' => 'tfap2a',
'ENSDARG00000089100' => 'OFCC1 (2 of 2)',
'ENSDARG00000074416' => 'OFCC1 (1 of 2)'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NC_0001',
'tax_id' => '9606',
'chromosome' => '6',
'seq_start' => '8153140',
'seq_end' => '10408054',
'region_length' => '2254914',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2A'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NC_0002',
'tax_id' => '10090',
'chromosome' => '13',
'seq_start' => '38708565',
'seq_end' => '40726483',
'region_length' => '2017918',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2A'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NC_0003',
'tax_id' => '7955',
'chromosome' => '24',
'seq_start' => '8240200',
'seq_end' => '8521399',
'region_length' => '281199',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2A'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NC_0004',
'tax_id' => '7955',
'chromosome' => 'Zv9_NA372',
'seq_start' => '71575',
'seq_end' => '183619',
'region_length' => '112044',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2A'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NC_0005',
'tax_id' => '7955',
'chromosome' => 'Zv9_NA461',
'seq_start' => '7066',
'seq_end' => '33090',
'region_length' => '26024',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2A'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NC_0006',
'tax_id' => '7955',
'chromosome' => 'Zv9_NA73',
'seq_start' => '4623',
'seq_end' => '4788',
'region_length' => '165',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2A'
)
),
(int) 6 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NC_0007',
'tax_id' => '7955',
'chromosome' => 'Zv9_NA822',
'seq_start' => '54938',
'seq_end' => '55292',
'region_length' => '354',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2A'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 13 => 'Adrenal',
(int) 25 => 'Bladder',
(int) 37 => 'Brain',
(int) 59 => 'Breast',
(int) 73 => 'Colon',
(int) 84 => 'Heart',
(int) 103 => 'Kidney',
(int) 122 => 'Liver',
(int) 139 => 'Lung',
(int) 151 => 'Muscle',
(int) 163 => 'Ovary',
(int) 182 => 'Placenta',
(int) 201 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 68
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000379660' => array(
'start' => '8413068',
'end' => '8435483',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SLC35B3-001'
),
'ENST00000319516' => array(
'start' => '10397872',
'end' => '10419638',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-003'
),
'ENST00000379604' => array(
'start' => '10396683',
'end' => '10415237',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-201'
),
'ENST00000379608' => array(
'start' => '10397915',
'end' => '10412374',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-005'
),
'ENST00000379613' => array(
'start' => '10396677',
'end' => '10415248',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-001'
),
'ENST00000461628' => array(
'start' => '10393186',
'end' => '10404594',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-017'
),
'ENST00000462727' => array(
'start' => '10406794',
'end' => '10410942',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFAP2A-014'
),
'ENST00000464323' => array(
'start' => '10409086',
'end' => '10419554',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TFAP2A-006'
),
'ENST00000465858' => array(
'start' => '10409997',
'end' => '10412879',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-016'
),
'ENST00000466073' => array(
'start' => '10398602',
'end' => '10414985',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-010'
),
'ENST00000473652' => array(
'start' => '10404668',
'end' => '10419659',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFAP2A-013'
),
'ENST00000474952' => array(
'start' => '10406136',
'end' => '10412046',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TFAP2A-012'
),
'ENST00000475264' => array(
'start' => '10400714',
'end' => '10410094',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-018'
),
'ENST00000478375' => array(
'start' => '10402026',
'end' => '10414985',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TFAP2A-002'
),
'ENST00000482890' => array(
'start' => '10398013',
'end' => '10416190',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-007'
),
'ENST00000486038' => array(
'start' => '10418189',
'end' => '10419623',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFAP2A-019'
),
'ENST00000488193' => array(
'start' => '10397915',
'end' => '10415206',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TFAP2A-008'
),
'ENST00000489805' => array(
'start' => '10397410',
'end' => '10412175',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TFAP2A-011'
),
'ENST00000490875' => array(
'start' => '10404621',
'end' => '10417207',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFAP2A-004'
),
'ENST00000497266' => array(
'start' => '10398688',
'end' => '10411018',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFAP2A-015'
),
'ENST00000498450' => array(
'start' => '10402538',
'end' => '10415000',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-009'
),
'ENST00000316020' => array(
'start' => '9896717',
'end' => '9933436',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1-201'
),
'ENST00000460066' => array(
'start' => '9750251',
'end' => '9939349',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OFCC1-007'
),
'ENST00000460363' => array(
'start' => '9707762',
'end' => '9939319',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1-001'
),
'ENST00000462111' => array(
'start' => '10060702',
'end' => '10211540',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OFCC1-018'
),
'ENST00000466385' => array(
'start' => '9896866',
'end' => '9939328',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OFCC1-008'
),
'ENST00000469421' => array(
'start' => '9596110',
'end' => '9599793',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OFCC1-022'
),
'ENST00000469426' => array(
'start' => '9809745',
'end' => '9933281',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'OFCC1-005'
),
'ENST00000469656' => array(
'start' => '9819162',
'end' => '9908520',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'OFCC1-019'
),
'ENST00000472329' => array(
'start' => '9896711',
'end' => '10060765',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OFCC1-003'
),
'ENST00000481704' => array(
'start' => '9939289',
'end' => '10211608',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1-017'
),
'ENST00000485268' => array(
'start' => '9939289',
'end' => '10114774',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1-004'
),
'ENST00000486246' => array(
'start' => '9840322',
'end' => '9933289',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'OFCC1-009'
),
'ENST00000487015' => array(
'start' => '9705425',
'end' => '9933281',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'OFCC1-002'
),
'ENST00000491508' => array(
'start' => '9900413',
'end' => '9977599',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1-006'
),
'ENST00000492094' => array(
'start' => '9596290',
'end' => '9939328',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'OFCC1-021'
),
'ENST00000492169' => array(
'start' => '9707933',
'end' => '9933267',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1-010'
),
'ENST00000611763' => array(
'start' => '9896717',
'end' => '9933436',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1-202'
),
'ENST00000622909' => array(
'start' => '9896866',
'end' => '9939328',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1-203'
),
'ENST00000401715' => array(
'start' => '10118452',
'end' => '10119253',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP3-486D24.1-001'
),
'ENST00000405921' => array(
'start' => '10365593',
'end' => '10366582',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP1-290I10.2-001'
),
'ENST00000408656' => array(
'start' => '10222036',
'end' => '10222161',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6ATAC21P-201'
),
'ENST00000431369' => array(
'start' => '9124221',
'end' => '9161777',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-354I10.1-001'
),
'ENST00000417077' => array(
'start' => '10213881',
'end' => '10214362',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-339A7.1-001'
),
'ENST00000429060' => array(
'start' => '8784178',
'end' => '8785445',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-314C16.1-001'
),
'ENST00000439891' => array(
'start' => '8329655',
'end' => '8342455',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-203H2.1-001'
),
'ENST00000415575' => array(
'start' => '8341937',
'end' => '8343021',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-203H2.2-001'
),
'ENST00000503668' => array(
'start' => '8652137',
'end' => '8653846',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'HULC-001'
),
'ENST00000610392' => array(
'start' => '10312350',
'end' => '10312458',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AL138885.1-201'
),
'ENST00000612720' => array(
'start' => '8653558',
'end' => '8653797',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'HULC.1-201'
),
'ENSMUST00000021787' => array(
'start' => '40715675',
'end' => '40730418',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tfap2a-201'
),
'ENSMUST00000110193' => array(
'start' => '40715675',
'end' => '40733823',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tfap2a-202'
),
'ENSMUST00000021870' => array(
'start' => '38932140',
'end' => '38960875',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Slc35b3-201'
),
'ENSMUST00000167513' => array(
'start' => '38932140',
'end' => '38960537',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Slc35b3-202'
),
'ENSMUST00000054635' => array(
'start' => '40001882',
'end' => '40288011',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ofcc1-201'
),
'ENSMUST00000069457' => array(
'start' => '40704005',
'end' => '40707949',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm9979-201'
),
'ENSMUST00000083322' => array(
'start' => '39858863',
'end' => '39859027',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm23972-201'
),
'ENSMUST00000157284' => array(
'start' => '38898360',
'end' => '38898587',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm22035-201'
),
'ENSMUST00000181376' => array(
'start' => '38960619',
'end' => '38966299',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '5033403F01Rik-201'
),
'ENSMUST00000181087' => array(
'start' => '38945543',
'end' => '38951313',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26514-201'
),
'ENSDART00000149025' => array(
'start' => '8288604',
'end' => '8305014',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'slc35b3-002'
),
'ENSDART00000149662' => array(
'start' => '8301953',
'end' => '8304947',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'slc35b3-003'
),
'ENSDART00000150055' => array(
'start' => '8288596',
'end' => '8307832',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'slc35b3-001'
),
'ENSDART00000082346' => array(
'start' => '8521277',
'end' => '8529215',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2a-201'
),
'ENSDART00000082349' => array(
'start' => '8521274',
'end' => '8530614',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2a-202'
),
'ENSDART00000082351' => array(
'start' => '8521274',
'end' => '8532116',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2a-203'
),
'ENSDART00000125114' => array(
'start' => '125961',
'end' => '205798',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1 (2 of 2)-201'
),
'ENSDART00000112094' => array(
'start' => '22627',
'end' => '70442',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1 (1 of 2)-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007NC_0001' => array(
'genes_in_region' => array(
'ENSG00000124786' => array(
[maximum depth reached]
),
'ENSG00000137203' => array(
[maximum depth reached]
),
'ENSG00000216368' => array(
[maximum depth reached]
),
'ENSG00000216781' => array(
[maximum depth reached]
),
'ENSG00000225775' => array(
[maximum depth reached]
),
'ENSG00000229765' => array(
[maximum depth reached]
),
'ENSG00000230939' => array(
[maximum depth reached]
),
'ENSG00000232234' => array(
[maximum depth reached]
),
'ENSG00000234763' => array(
[maximum depth reached]
),
'ENSG00000251164' => array(
[maximum depth reached]
),
'ENSG00000275271' => array(
[maximum depth reached]
),
'ENSG00000276019' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Bladder',
(int) 15 => 'Adipose',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 22 => 'Adipose',
(int) 23 => 'Bladder',
(int) 24 => 'Lung',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Liver',
(int) 29 => 'Bladder',
(int) 30 => 'Adipose',
(int) 31 => 'Colon',
(int) 32 => 'Ovary',
(int) 33 => 'Placenta',
(int) 34 => 'Lung',
(int) 35 => 'Ovary',
(int) 36 => 'Testis',
(int) 37 => 'Breast',
(int) 38 => 'Colon',
(int) 39 => 'Placenta',
(int) 40 => 'Testis',
(int) 41 => 'Adrenal',
(int) 42 => 'Heart',
(int) 43 => 'Breast',
(int) 44 => 'Bladder',
(int) 45 => 'Adrenal',
(int) 46 => 'Colon',
(int) 47 => 'Heart',
(int) 48 => 'Kidney',
(int) 49 => 'Ovary',
(int) 50 => 'Placenta',
(int) 51 => 'Testis',
(int) 52 => 'Liver',
(int) 53 => 'Heart',
(int) 54 => 'Testis',
(int) 55 => 'Ovary',
(int) 56 => 'Ovary',
(int) 57 => 'Testis',
(int) 58 => 'Placenta',
(int) 59 => 'Adrenal',
(int) 60 => 'Bladder',
(int) 61 => 'Brain',
(int) 62 => 'Breast',
(int) 63 => 'Heart',
(int) 64 => 'Muscle',
(int) 65 => 'Ovary',
(int) 66 => 'Testis',
(int) 67 => 'Liver',
(int) 68 => 'Ovary',
(int) 69 => 'Ovary',
(int) 70 => 'Testis',
(int) 71 => 'Placenta',
(int) 72 => 'Bladder',
(int) 73 => 'Ovary',
(int) 74 => 'Testis',
(int) 75 => 'Liver',
(int) 76 => 'Adrenal',
(int) 77 => 'Brain',
(int) 78 => 'Breast',
(int) 79 => 'Muscle',
(int) 80 => 'Brain',
(int) 81 => 'Kidney',
(int) 82 => 'Testis',
(int) 83 => 'Adipose',
(int) 84 => 'Colon',
(int) 85 => 'Heart',
(int) 86 => 'Lung',
(int) 87 => 'Placenta',
(int) 88 => 'Testis',
(int) 89 => 'Adipose',
(int) 90 => 'Adrenal',
(int) 91 => 'Brain',
(int) 92 => 'Breast',
(int) 93 => 'Colon',
(int) 94 => 'Heart',
(int) 95 => 'Kidney',
(int) 96 => 'Lung',
(int) 97 => 'Ovary',
(int) 98 => 'Placenta',
(int) 99 => 'Testis',
(int) 100 => 'Kidney',
(int) 101 => 'Placenta',
(int) 102 => 'Testis',
(int) 103 => 'Adipose',
(int) 104 => 'Colon',
(int) 105 => 'Placenta',
(int) 106 => 'Testis',
(int) 107 => 'Breast',
(int) 108 => 'Heart',
(int) 109 => 'Kidney',
(int) 110 => 'Liver',
(int) 111 => 'Lung',
(int) 112 => 'Ovary',
(int) 113 => 'Adipose',
(int) 114 => 'Adrenal',
(int) 115 => 'Brain',
(int) 116 => 'Breast',
(int) 117 => 'Heart',
(int) 118 => 'Kidney',
(int) 119 => 'Liver',
(int) 120 => 'Lung',
(int) 121 => 'Ovary',
(int) 122 => 'Testis',
(int) 123 => 'Adrenal',
(int) 124 => 'Brain',
(int) 125 => 'Liver',
(int) 126 => 'Placenta',
(int) 127 => 'Testis'
)
),
'CIL_0007NC_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000021359' => array(
[maximum depth reached]
),
'ENSMUSG00000021432' => array(
[maximum depth reached]
),
'ENSMUSG00000047094' => array(
[maximum depth reached]
),
'ENSMUSG00000055732' => array(
[maximum depth reached]
),
'ENSMUSG00000087909' => array(
[maximum depth reached]
),
'ENSMUSG00000096932' => array(
[maximum depth reached]
),
'ENSMUSG00000097151' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Kidney',
(int) 5 => 'Lung',
(int) 6 => 'Placenta',
(int) 7 => 'Testis',
(int) 8 => 'Adipose',
(int) 9 => 'Adrenal',
(int) 10 => 'Bladder',
(int) 11 => 'Brain',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Heart',
(int) 15 => 'Kidney',
(int) 16 => 'Liver',
(int) 17 => 'Lung',
(int) 18 => 'Muscle',
(int) 19 => 'Ovary',
(int) 20 => 'Placenta',
(int) 21 => 'Testis',
(int) 22 => 'Adrenal',
(int) 23 => 'Kidney',
(int) 24 => 'Adipose',
(int) 25 => 'Adrenal',
(int) 26 => 'Bladder',
(int) 27 => 'Brain',
(int) 28 => 'Breast',
(int) 29 => 'Colon',
(int) 30 => 'Heart',
(int) 31 => 'Kidney',
(int) 32 => 'Liver',
(int) 33 => 'Lung',
(int) 34 => 'Muscle',
(int) 35 => 'Ovary',
(int) 36 => 'Placenta',
(int) 37 => 'Testis',
(int) 38 => 'Adipose',
(int) 39 => 'Bladder',
(int) 40 => 'Brain',
(int) 41 => 'Breast',
(int) 42 => 'Kidney',
(int) 43 => 'Liver',
(int) 44 => 'Lung',
(int) 45 => 'Muscle',
(int) 46 => 'Ovary',
(int) 47 => 'Placenta',
(int) 48 => 'Testis',
(int) 49 => 'Bladder',
(int) 50 => 'Brain',
(int) 51 => 'Placenta',
(int) 52 => 'Testis',
(int) 53 => 'Brain',
(int) 54 => 'Testis',
(int) 55 => 'Adipose',
(int) 56 => 'Adrenal',
(int) 57 => 'Bladder',
(int) 58 => 'Brain',
(int) 59 => 'Breast',
(int) 60 => 'Colon',
(int) 61 => 'Heart',
(int) 62 => 'Kidney',
(int) 63 => 'Liver',
(int) 64 => 'Lung',
(int) 65 => 'Muscle',
(int) 66 => 'Ovary',
(int) 67 => 'Placenta',
(int) 68 => 'Testis'
)
),
'CIL_0007NC_0003' => array(
'genes_in_region' => array(
'ENSDARG00000045437' => array(
[maximum depth reached]
),
'ENSDARG00000059279' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Muscle',
(int) 10 => 'Brain',
(int) 11 => 'Heart',
(int) 12 => 'Muscle',
(int) 13 => 'Brain',
(int) 14 => 'Heart',
(int) 15 => 'Liver',
(int) 16 => 'Brain',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver'
)
),
'CIL_0007NC_0004' => array(
'genes_in_region' => array(
'ENSDARG00000089100' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Muscle'
)
),
'CIL_0007NC_0005' => array(
'genes_in_region' => array(
'ENSDARG00000074416' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Muscle'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NC_0007',
'tax_id' => '7955',
'chromosome' => 'Zv9_NA822',
'seq_start' => '54938',
'seq_end' => '55292',
'region_length' => '354',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2A'
)
)
$gene_el = array(
'ENSDART00000112094' => array(
'Brain' => array(
'average_FPKM' => '0.433',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.087',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '0.050',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.044',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSDARG00000074416'
$is_first = false
$tran_el = array(
'Brain' => array(
'average_FPKM' => '0.433',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.087',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '0.050',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.044',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSDART00000112094'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007NC_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NC_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NC_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NC_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NC_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000124786' => 'solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B3',
'ENSG00000137203' => 'transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)',
'ENSG00000181355' => 'orofacial cleft 1 candidate 1',
'ENSG00000216368' => null,
'ENSG00000216781' => null,
'ENSG00000221583' => 'RNA, U6atac small nuclear 21, pseudogene',
'ENSG00000225775' => null,
'ENSG00000229765' => null,
'ENSG00000230939' => null,
'ENSG00000232234' => null,
'ENSG00000234763' => null,
'ENSG00000251164' => 'hepatocellular carcinoma up-regulated long non-coding RNA',
'ENSG00000275271' => null,
'ENSG00000276019' => 'Highly up-regulated in liver cancer conserved region',
'ENSMUSG00000021359' => 'transcription factor AP-2, alpha',
'ENSMUSG00000021432' => 'solute carrier family 35, member B3',
'ENSMUSG00000047094' => 'orofacial cleft 1 candidate 1',
'ENSMUSG00000055732' => 'predicted gene 9979',
'ENSMUSG00000065256' => 'predicted gene, 23972',
'ENSMUSG00000087909' => 'predicted gene, 22035',
'ENSMUSG00000096932' => 'RIKEN cDNA 5033403F01 gene',
'ENSMUSG00000097151' => 'predicted gene, 26514',
'ENSDARG00000045437' => 'solute carrier family 35, member B3',
'ENSDARG00000059279' => 'transcription factor AP-2 alpha',
'ENSDARG00000089100' => 'orofacial cleft 1 candidate 1',
'ENSDARG00000074416' => null
),
'gene_name_arr' => array(
'ENSG00000124786' => 'SLC35B3',
'ENSG00000137203' => 'TFAP2A',
'ENSG00000181355' => 'OFCC1',
'ENSG00000216368' => 'RP3-486D24.1',
'ENSG00000216781' => 'RP1-290I10.2',
'ENSG00000221583' => 'RNU6ATAC21P',
'ENSG00000225775' => 'RP11-354I10.1',
'ENSG00000229765' => 'RP11-339A7.1',
'ENSG00000230939' => 'RP11-314C16.1',
'ENSG00000232234' => 'RP11-203H2.1',
'ENSG00000234763' => 'RP11-203H2.2',
'ENSG00000251164' => 'HULC',
'ENSG00000275271' => 'AL138885.1',
'ENSG00000276019' => 'HULC',
'ENSMUSG00000021359' => 'Tfap2a',
'ENSMUSG00000021432' => 'Slc35b3',
'ENSMUSG00000047094' => 'Ofcc1',
'ENSMUSG00000055732' => 'Gm9979',
'ENSMUSG00000065256' => 'Gm23972',
'ENSMUSG00000087909' => 'Gm22035',
'ENSMUSG00000096932' => '5033403F01Rik',
'ENSMUSG00000097151' => 'Gm26514',
'ENSDARG00000045437' => 'slc35b3',
'ENSDARG00000059279' => 'tfap2a',
'ENSDARG00000089100' => 'OFCC1 (2 of 2)',
'ENSDARG00000074416' => 'OFCC1 (1 of 2)'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 6 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 13 => 'Adrenal',
(int) 25 => 'Bladder',
(int) 37 => 'Brain',
(int) 59 => 'Breast',
(int) 73 => 'Colon',
(int) 84 => 'Heart',
(int) 103 => 'Kidney',
(int) 122 => 'Liver',
(int) 139 => 'Lung',
(int) 151 => 'Muscle',
(int) 163 => 'Ovary',
(int) 182 => 'Placenta',
(int) 201 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 68,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000379660' => array(
'start' => '8413068',
'end' => '8435483',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SLC35B3-001'
),
'ENST00000319516' => array(
'start' => '10397872',
'end' => '10419638',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-003'
),
'ENST00000379604' => array(
'start' => '10396683',
'end' => '10415237',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-201'
),
'ENST00000379608' => array(
'start' => '10397915',
'end' => '10412374',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-005'
),
'ENST00000379613' => array(
'start' => '10396677',
'end' => '10415248',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-001'
),
'ENST00000461628' => array(
'start' => '10393186',
'end' => '10404594',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-017'
),
'ENST00000462727' => array(
'start' => '10406794',
'end' => '10410942',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFAP2A-014'
),
'ENST00000464323' => array(
'start' => '10409086',
'end' => '10419554',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TFAP2A-006'
),
'ENST00000465858' => array(
'start' => '10409997',
'end' => '10412879',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-016'
),
'ENST00000466073' => array(
'start' => '10398602',
'end' => '10414985',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-010'
),
'ENST00000473652' => array(
'start' => '10404668',
'end' => '10419659',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFAP2A-013'
),
'ENST00000474952' => array(
'start' => '10406136',
'end' => '10412046',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TFAP2A-012'
),
'ENST00000475264' => array(
'start' => '10400714',
'end' => '10410094',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-018'
),
'ENST00000478375' => array(
'start' => '10402026',
'end' => '10414985',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TFAP2A-002'
),
'ENST00000482890' => array(
'start' => '10398013',
'end' => '10416190',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-007'
),
'ENST00000486038' => array(
'start' => '10418189',
'end' => '10419623',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFAP2A-019'
),
'ENST00000488193' => array(
'start' => '10397915',
'end' => '10415206',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TFAP2A-008'
),
'ENST00000489805' => array(
'start' => '10397410',
'end' => '10412175',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TFAP2A-011'
),
'ENST00000490875' => array(
'start' => '10404621',
'end' => '10417207',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFAP2A-004'
),
'ENST00000497266' => array(
'start' => '10398688',
'end' => '10411018',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFAP2A-015'
),
'ENST00000498450' => array(
'start' => '10402538',
'end' => '10415000',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-009'
),
'ENST00000316020' => array(
'start' => '9896717',
'end' => '9933436',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1-201'
),
'ENST00000460066' => array(
'start' => '9750251',
'end' => '9939349',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OFCC1-007'
),
'ENST00000460363' => array(
'start' => '9707762',
'end' => '9939319',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1-001'
),
'ENST00000462111' => array(
'start' => '10060702',
'end' => '10211540',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OFCC1-018'
),
'ENST00000466385' => array(
'start' => '9896866',
'end' => '9939328',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OFCC1-008'
),
'ENST00000469421' => array(
'start' => '9596110',
'end' => '9599793',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OFCC1-022'
),
'ENST00000469426' => array(
'start' => '9809745',
'end' => '9933281',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'OFCC1-005'
),
'ENST00000469656' => array(
'start' => '9819162',
'end' => '9908520',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'OFCC1-019'
),
'ENST00000472329' => array(
'start' => '9896711',
'end' => '10060765',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OFCC1-003'
),
'ENST00000481704' => array(
'start' => '9939289',
'end' => '10211608',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1-017'
),
'ENST00000485268' => array(
'start' => '9939289',
'end' => '10114774',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1-004'
),
'ENST00000486246' => array(
'start' => '9840322',
'end' => '9933289',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'OFCC1-009'
),
'ENST00000487015' => array(
'start' => '9705425',
'end' => '9933281',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'OFCC1-002'
),
'ENST00000491508' => array(
'start' => '9900413',
'end' => '9977599',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1-006'
),
'ENST00000492094' => array(
'start' => '9596290',
'end' => '9939328',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'OFCC1-021'
),
'ENST00000492169' => array(
'start' => '9707933',
'end' => '9933267',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1-010'
),
'ENST00000611763' => array(
'start' => '9896717',
'end' => '9933436',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1-202'
),
'ENST00000622909' => array(
'start' => '9896866',
'end' => '9939328',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1-203'
),
'ENST00000401715' => array(
'start' => '10118452',
'end' => '10119253',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP3-486D24.1-001'
),
'ENST00000405921' => array(
'start' => '10365593',
'end' => '10366582',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP1-290I10.2-001'
),
'ENST00000408656' => array(
'start' => '10222036',
'end' => '10222161',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6ATAC21P-201'
),
'ENST00000431369' => array(
'start' => '9124221',
'end' => '9161777',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-354I10.1-001'
),
'ENST00000417077' => array(
'start' => '10213881',
'end' => '10214362',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-339A7.1-001'
),
'ENST00000429060' => array(
'start' => '8784178',
'end' => '8785445',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-314C16.1-001'
),
'ENST00000439891' => array(
'start' => '8329655',
'end' => '8342455',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-203H2.1-001'
),
'ENST00000415575' => array(
'start' => '8341937',
'end' => '8343021',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-203H2.2-001'
),
'ENST00000503668' => array(
'start' => '8652137',
'end' => '8653846',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'HULC-001'
),
'ENST00000610392' => array(
'start' => '10312350',
'end' => '10312458',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AL138885.1-201'
),
'ENST00000612720' => array(
'start' => '8653558',
'end' => '8653797',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'HULC.1-201'
),
'ENSMUST00000021787' => array(
'start' => '40715675',
'end' => '40730418',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tfap2a-201'
),
'ENSMUST00000110193' => array(
'start' => '40715675',
'end' => '40733823',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tfap2a-202'
),
'ENSMUST00000021870' => array(
'start' => '38932140',
'end' => '38960875',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Slc35b3-201'
),
'ENSMUST00000167513' => array(
'start' => '38932140',
'end' => '38960537',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Slc35b3-202'
),
'ENSMUST00000054635' => array(
'start' => '40001882',
'end' => '40288011',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ofcc1-201'
),
'ENSMUST00000069457' => array(
'start' => '40704005',
'end' => '40707949',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm9979-201'
),
'ENSMUST00000083322' => array(
'start' => '39858863',
'end' => '39859027',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm23972-201'
),
'ENSMUST00000157284' => array(
'start' => '38898360',
'end' => '38898587',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm22035-201'
),
'ENSMUST00000181376' => array(
'start' => '38960619',
'end' => '38966299',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '5033403F01Rik-201'
),
'ENSMUST00000181087' => array(
'start' => '38945543',
'end' => '38951313',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26514-201'
),
'ENSDART00000149025' => array(
'start' => '8288604',
'end' => '8305014',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'slc35b3-002'
),
'ENSDART00000149662' => array(
'start' => '8301953',
'end' => '8304947',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'slc35b3-003'
),
'ENSDART00000150055' => array(
'start' => '8288596',
'end' => '8307832',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'slc35b3-001'
),
'ENSDART00000082346' => array(
'start' => '8521277',
'end' => '8529215',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2a-201'
),
'ENSDART00000082349' => array(
'start' => '8521274',
'end' => '8530614',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2a-202'
),
'ENSDART00000082351' => array(
'start' => '8521274',
'end' => '8532116',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2a-203'
),
'ENSDART00000125114' => array(
'start' => '125961',
'end' => '205798',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1 (2 of 2)-201'
),
'ENSDART00000112094' => array(
'start' => '22627',
'end' => '70442',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1 (1 of 2)-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007NC_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NC_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NC_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NC_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007NC_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007NC_0001' => array(
'genes_in_region' => array(
'ENSG00000124786' => array(
[maximum depth reached]
),
'ENSG00000137203' => array(
[maximum depth reached]
),
'ENSG00000216368' => array(
[maximum depth reached]
),
'ENSG00000216781' => array(
[maximum depth reached]
),
'ENSG00000225775' => array(
[maximum depth reached]
),
'ENSG00000229765' => array(
[maximum depth reached]
),
'ENSG00000230939' => array(
[maximum depth reached]
),
'ENSG00000232234' => array(
[maximum depth reached]
),
'ENSG00000234763' => array(
[maximum depth reached]
),
'ENSG00000251164' => array(
[maximum depth reached]
),
'ENSG00000275271' => array(
[maximum depth reached]
),
'ENSG00000276019' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Bladder',
(int) 15 => 'Adipose',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 22 => 'Adipose',
(int) 23 => 'Bladder',
(int) 24 => 'Lung',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Liver',
(int) 29 => 'Bladder',
(int) 30 => 'Adipose',
(int) 31 => 'Colon',
(int) 32 => 'Ovary',
(int) 33 => 'Placenta',
(int) 34 => 'Lung',
(int) 35 => 'Ovary',
(int) 36 => 'Testis',
(int) 37 => 'Breast',
(int) 38 => 'Colon',
(int) 39 => 'Placenta',
(int) 40 => 'Testis',
(int) 41 => 'Adrenal',
(int) 42 => 'Heart',
(int) 43 => 'Breast',
(int) 44 => 'Bladder',
(int) 45 => 'Adrenal',
(int) 46 => 'Colon',
(int) 47 => 'Heart',
(int) 48 => 'Kidney',
(int) 49 => 'Ovary',
(int) 50 => 'Placenta',
(int) 51 => 'Testis',
(int) 52 => 'Liver',
(int) 53 => 'Heart',
(int) 54 => 'Testis',
(int) 55 => 'Ovary',
(int) 56 => 'Ovary',
(int) 57 => 'Testis',
(int) 58 => 'Placenta',
(int) 59 => 'Adrenal',
(int) 60 => 'Bladder',
(int) 61 => 'Brain',
(int) 62 => 'Breast',
(int) 63 => 'Heart',
(int) 64 => 'Muscle',
(int) 65 => 'Ovary',
(int) 66 => 'Testis',
(int) 67 => 'Liver',
(int) 68 => 'Ovary',
(int) 69 => 'Ovary',
(int) 70 => 'Testis',
(int) 71 => 'Placenta',
(int) 72 => 'Bladder',
(int) 73 => 'Ovary',
(int) 74 => 'Testis',
(int) 75 => 'Liver',
(int) 76 => 'Adrenal',
(int) 77 => 'Brain',
(int) 78 => 'Breast',
(int) 79 => 'Muscle',
(int) 80 => 'Brain',
(int) 81 => 'Kidney',
(int) 82 => 'Testis',
(int) 83 => 'Adipose',
(int) 84 => 'Colon',
(int) 85 => 'Heart',
(int) 86 => 'Lung',
(int) 87 => 'Placenta',
(int) 88 => 'Testis',
(int) 89 => 'Adipose',
(int) 90 => 'Adrenal',
(int) 91 => 'Brain',
(int) 92 => 'Breast',
(int) 93 => 'Colon',
(int) 94 => 'Heart',
(int) 95 => 'Kidney',
(int) 96 => 'Lung',
(int) 97 => 'Ovary',
(int) 98 => 'Placenta',
(int) 99 => 'Testis',
(int) 100 => 'Kidney',
(int) 101 => 'Placenta',
(int) 102 => 'Testis',
(int) 103 => 'Adipose',
(int) 104 => 'Colon',
(int) 105 => 'Placenta',
(int) 106 => 'Testis',
(int) 107 => 'Breast',
(int) 108 => 'Heart',
(int) 109 => 'Kidney',
(int) 110 => 'Liver',
(int) 111 => 'Lung',
(int) 112 => 'Ovary',
(int) 113 => 'Adipose',
(int) 114 => 'Adrenal',
(int) 115 => 'Brain',
(int) 116 => 'Breast',
(int) 117 => 'Heart',
(int) 118 => 'Kidney',
(int) 119 => 'Liver',
(int) 120 => 'Lung',
(int) 121 => 'Ovary',
(int) 122 => 'Testis',
(int) 123 => 'Adrenal',
(int) 124 => 'Brain',
(int) 125 => 'Liver',
(int) 126 => 'Placenta',
(int) 127 => 'Testis'
)
),
'CIL_0007NC_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000021359' => array(
[maximum depth reached]
),
'ENSMUSG00000021432' => array(
[maximum depth reached]
),
'ENSMUSG00000047094' => array(
[maximum depth reached]
),
'ENSMUSG00000055732' => array(
[maximum depth reached]
),
'ENSMUSG00000087909' => array(
[maximum depth reached]
),
'ENSMUSG00000096932' => array(
[maximum depth reached]
),
'ENSMUSG00000097151' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Kidney',
(int) 5 => 'Lung',
(int) 6 => 'Placenta',
(int) 7 => 'Testis',
(int) 8 => 'Adipose',
(int) 9 => 'Adrenal',
(int) 10 => 'Bladder',
(int) 11 => 'Brain',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Heart',
(int) 15 => 'Kidney',
(int) 16 => 'Liver',
(int) 17 => 'Lung',
(int) 18 => 'Muscle',
(int) 19 => 'Ovary',
(int) 20 => 'Placenta',
(int) 21 => 'Testis',
(int) 22 => 'Adrenal',
(int) 23 => 'Kidney',
(int) 24 => 'Adipose',
(int) 25 => 'Adrenal',
(int) 26 => 'Bladder',
(int) 27 => 'Brain',
(int) 28 => 'Breast',
(int) 29 => 'Colon',
(int) 30 => 'Heart',
(int) 31 => 'Kidney',
(int) 32 => 'Liver',
(int) 33 => 'Lung',
(int) 34 => 'Muscle',
(int) 35 => 'Ovary',
(int) 36 => 'Placenta',
(int) 37 => 'Testis',
(int) 38 => 'Adipose',
(int) 39 => 'Bladder',
(int) 40 => 'Brain',
(int) 41 => 'Breast',
(int) 42 => 'Kidney',
(int) 43 => 'Liver',
(int) 44 => 'Lung',
(int) 45 => 'Muscle',
(int) 46 => 'Ovary',
(int) 47 => 'Placenta',
(int) 48 => 'Testis',
(int) 49 => 'Bladder',
(int) 50 => 'Brain',
(int) 51 => 'Placenta',
(int) 52 => 'Testis',
(int) 53 => 'Brain',
(int) 54 => 'Testis',
(int) 55 => 'Adipose',
(int) 56 => 'Adrenal',
(int) 57 => 'Bladder',
(int) 58 => 'Brain',
(int) 59 => 'Breast',
(int) 60 => 'Colon',
(int) 61 => 'Heart',
(int) 62 => 'Kidney',
(int) 63 => 'Liver',
(int) 64 => 'Lung',
(int) 65 => 'Muscle',
(int) 66 => 'Ovary',
(int) 67 => 'Placenta',
(int) 68 => 'Testis'
)
),
'CIL_0007NC_0003' => array(
'genes_in_region' => array(
'ENSDARG00000045437' => array(
[maximum depth reached]
),
'ENSDARG00000059279' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Muscle',
(int) 10 => 'Brain',
(int) 11 => 'Heart',
(int) 12 => 'Muscle',
(int) 13 => 'Brain',
(int) 14 => 'Heart',
(int) 15 => 'Liver',
(int) 16 => 'Brain',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver'
)
),
'CIL_0007NC_0004' => array(
'genes_in_region' => array(
'ENSDARG00000089100' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Muscle'
)
),
'CIL_0007NC_0005' => array(
'genes_in_region' => array(
'ENSDARG00000074416' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Muscle'
)
)
)
$gene_desc_arr = array(
'ENSG00000124786' => 'solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B3',
'ENSG00000137203' => 'transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)',
'ENSG00000181355' => 'orofacial cleft 1 candidate 1',
'ENSG00000216368' => null,
'ENSG00000216781' => null,
'ENSG00000221583' => 'RNA, U6atac small nuclear 21, pseudogene',
'ENSG00000225775' => null,
'ENSG00000229765' => null,
'ENSG00000230939' => null,
'ENSG00000232234' => null,
'ENSG00000234763' => null,
'ENSG00000251164' => 'hepatocellular carcinoma up-regulated long non-coding RNA',
'ENSG00000275271' => null,
'ENSG00000276019' => 'Highly up-regulated in liver cancer conserved region',
'ENSMUSG00000021359' => 'transcription factor AP-2, alpha',
'ENSMUSG00000021432' => 'solute carrier family 35, member B3',
'ENSMUSG00000047094' => 'orofacial cleft 1 candidate 1',
'ENSMUSG00000055732' => 'predicted gene 9979',
'ENSMUSG00000065256' => 'predicted gene, 23972',
'ENSMUSG00000087909' => 'predicted gene, 22035',
'ENSMUSG00000096932' => 'RIKEN cDNA 5033403F01 gene',
'ENSMUSG00000097151' => 'predicted gene, 26514',
'ENSDARG00000045437' => 'solute carrier family 35, member B3',
'ENSDARG00000059279' => 'transcription factor AP-2 alpha',
'ENSDARG00000089100' => 'orofacial cleft 1 candidate 1',
'ENSDARG00000074416' => null
)
$gene_name_arr = array(
'ENSG00000124786' => 'SLC35B3',
'ENSG00000137203' => 'TFAP2A',
'ENSG00000181355' => 'OFCC1',
'ENSG00000216368' => 'RP3-486D24.1',
'ENSG00000216781' => 'RP1-290I10.2',
'ENSG00000221583' => 'RNU6ATAC21P',
'ENSG00000225775' => 'RP11-354I10.1',
'ENSG00000229765' => 'RP11-339A7.1',
'ENSG00000230939' => 'RP11-314C16.1',
'ENSG00000232234' => 'RP11-203H2.1',
'ENSG00000234763' => 'RP11-203H2.2',
'ENSG00000251164' => 'HULC',
'ENSG00000275271' => 'AL138885.1',
'ENSG00000276019' => 'HULC',
'ENSMUSG00000021359' => 'Tfap2a',
'ENSMUSG00000021432' => 'Slc35b3',
'ENSMUSG00000047094' => 'Ofcc1',
'ENSMUSG00000055732' => 'Gm9979',
'ENSMUSG00000065256' => 'Gm23972',
'ENSMUSG00000087909' => 'Gm22035',
'ENSMUSG00000096932' => '5033403F01Rik',
'ENSMUSG00000097151' => 'Gm26514',
'ENSDARG00000045437' => 'slc35b3',
'ENSDARG00000059279' => 'tfap2a',
'ENSDARG00000089100' => 'OFCC1 (2 of 2)',
'ENSDARG00000074416' => 'OFCC1 (1 of 2)'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NC_0001',
'tax_id' => '9606',
'chromosome' => '6',
'seq_start' => '8153140',
'seq_end' => '10408054',
'region_length' => '2254914',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2A'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NC_0002',
'tax_id' => '10090',
'chromosome' => '13',
'seq_start' => '38708565',
'seq_end' => '40726483',
'region_length' => '2017918',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2A'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NC_0003',
'tax_id' => '7955',
'chromosome' => '24',
'seq_start' => '8240200',
'seq_end' => '8521399',
'region_length' => '281199',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2A'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NC_0004',
'tax_id' => '7955',
'chromosome' => 'Zv9_NA372',
'seq_start' => '71575',
'seq_end' => '183619',
'region_length' => '112044',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2A'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NC_0005',
'tax_id' => '7955',
'chromosome' => 'Zv9_NA461',
'seq_start' => '7066',
'seq_end' => '33090',
'region_length' => '26024',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2A'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NC_0006',
'tax_id' => '7955',
'chromosome' => 'Zv9_NA73',
'seq_start' => '4623',
'seq_end' => '4788',
'region_length' => '165',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2A'
)
),
(int) 6 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NC_0007',
'tax_id' => '7955',
'chromosome' => 'Zv9_NA822',
'seq_start' => '54938',
'seq_end' => '55292',
'region_length' => '354',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2A'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 13 => 'Adrenal',
(int) 25 => 'Bladder',
(int) 37 => 'Brain',
(int) 59 => 'Breast',
(int) 73 => 'Colon',
(int) 84 => 'Heart',
(int) 103 => 'Kidney',
(int) 122 => 'Liver',
(int) 139 => 'Lung',
(int) 151 => 'Muscle',
(int) 163 => 'Ovary',
(int) 182 => 'Placenta',
(int) 201 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 68
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000379660' => array(
'start' => '8413068',
'end' => '8435483',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SLC35B3-001'
),
'ENST00000319516' => array(
'start' => '10397872',
'end' => '10419638',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-003'
),
'ENST00000379604' => array(
'start' => '10396683',
'end' => '10415237',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-201'
),
'ENST00000379608' => array(
'start' => '10397915',
'end' => '10412374',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-005'
),
'ENST00000379613' => array(
'start' => '10396677',
'end' => '10415248',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-001'
),
'ENST00000461628' => array(
'start' => '10393186',
'end' => '10404594',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-017'
),
'ENST00000462727' => array(
'start' => '10406794',
'end' => '10410942',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFAP2A-014'
),
'ENST00000464323' => array(
'start' => '10409086',
'end' => '10419554',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TFAP2A-006'
),
'ENST00000465858' => array(
'start' => '10409997',
'end' => '10412879',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-016'
),
'ENST00000466073' => array(
'start' => '10398602',
'end' => '10414985',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-010'
),
'ENST00000473652' => array(
'start' => '10404668',
'end' => '10419659',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFAP2A-013'
),
'ENST00000474952' => array(
'start' => '10406136',
'end' => '10412046',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TFAP2A-012'
),
'ENST00000475264' => array(
'start' => '10400714',
'end' => '10410094',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-018'
),
'ENST00000478375' => array(
'start' => '10402026',
'end' => '10414985',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TFAP2A-002'
),
'ENST00000482890' => array(
'start' => '10398013',
'end' => '10416190',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-007'
),
'ENST00000486038' => array(
'start' => '10418189',
'end' => '10419623',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFAP2A-019'
),
'ENST00000488193' => array(
'start' => '10397915',
'end' => '10415206',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TFAP2A-008'
),
'ENST00000489805' => array(
'start' => '10397410',
'end' => '10412175',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TFAP2A-011'
),
'ENST00000490875' => array(
'start' => '10404621',
'end' => '10417207',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFAP2A-004'
),
'ENST00000497266' => array(
'start' => '10398688',
'end' => '10411018',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TFAP2A-015'
),
'ENST00000498450' => array(
'start' => '10402538',
'end' => '10415000',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TFAP2A-009'
),
'ENST00000316020' => array(
'start' => '9896717',
'end' => '9933436',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1-201'
),
'ENST00000460066' => array(
'start' => '9750251',
'end' => '9939349',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OFCC1-007'
),
'ENST00000460363' => array(
'start' => '9707762',
'end' => '9939319',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1-001'
),
'ENST00000462111' => array(
'start' => '10060702',
'end' => '10211540',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OFCC1-018'
),
'ENST00000466385' => array(
'start' => '9896866',
'end' => '9939328',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OFCC1-008'
),
'ENST00000469421' => array(
'start' => '9596110',
'end' => '9599793',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OFCC1-022'
),
'ENST00000469426' => array(
'start' => '9809745',
'end' => '9933281',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'OFCC1-005'
),
'ENST00000469656' => array(
'start' => '9819162',
'end' => '9908520',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'OFCC1-019'
),
'ENST00000472329' => array(
'start' => '9896711',
'end' => '10060765',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OFCC1-003'
),
'ENST00000481704' => array(
'start' => '9939289',
'end' => '10211608',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1-017'
),
'ENST00000485268' => array(
'start' => '9939289',
'end' => '10114774',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1-004'
),
'ENST00000486246' => array(
'start' => '9840322',
'end' => '9933289',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'OFCC1-009'
),
'ENST00000487015' => array(
'start' => '9705425',
'end' => '9933281',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'OFCC1-002'
),
'ENST00000491508' => array(
'start' => '9900413',
'end' => '9977599',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1-006'
),
'ENST00000492094' => array(
'start' => '9596290',
'end' => '9939328',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'OFCC1-021'
),
'ENST00000492169' => array(
'start' => '9707933',
'end' => '9933267',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1-010'
),
'ENST00000611763' => array(
'start' => '9896717',
'end' => '9933436',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1-202'
),
'ENST00000622909' => array(
'start' => '9896866',
'end' => '9939328',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1-203'
),
'ENST00000401715' => array(
'start' => '10118452',
'end' => '10119253',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP3-486D24.1-001'
),
'ENST00000405921' => array(
'start' => '10365593',
'end' => '10366582',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP1-290I10.2-001'
),
'ENST00000408656' => array(
'start' => '10222036',
'end' => '10222161',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6ATAC21P-201'
),
'ENST00000431369' => array(
'start' => '9124221',
'end' => '9161777',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-354I10.1-001'
),
'ENST00000417077' => array(
'start' => '10213881',
'end' => '10214362',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-339A7.1-001'
),
'ENST00000429060' => array(
'start' => '8784178',
'end' => '8785445',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-314C16.1-001'
),
'ENST00000439891' => array(
'start' => '8329655',
'end' => '8342455',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-203H2.1-001'
),
'ENST00000415575' => array(
'start' => '8341937',
'end' => '8343021',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-203H2.2-001'
),
'ENST00000503668' => array(
'start' => '8652137',
'end' => '8653846',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'HULC-001'
),
'ENST00000610392' => array(
'start' => '10312350',
'end' => '10312458',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AL138885.1-201'
),
'ENST00000612720' => array(
'start' => '8653558',
'end' => '8653797',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'HULC.1-201'
),
'ENSMUST00000021787' => array(
'start' => '40715675',
'end' => '40730418',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tfap2a-201'
),
'ENSMUST00000110193' => array(
'start' => '40715675',
'end' => '40733823',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tfap2a-202'
),
'ENSMUST00000021870' => array(
'start' => '38932140',
'end' => '38960875',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Slc35b3-201'
),
'ENSMUST00000167513' => array(
'start' => '38932140',
'end' => '38960537',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Slc35b3-202'
),
'ENSMUST00000054635' => array(
'start' => '40001882',
'end' => '40288011',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ofcc1-201'
),
'ENSMUST00000069457' => array(
'start' => '40704005',
'end' => '40707949',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm9979-201'
),
'ENSMUST00000083322' => array(
'start' => '39858863',
'end' => '39859027',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm23972-201'
),
'ENSMUST00000157284' => array(
'start' => '38898360',
'end' => '38898587',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm22035-201'
),
'ENSMUST00000181376' => array(
'start' => '38960619',
'end' => '38966299',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '5033403F01Rik-201'
),
'ENSMUST00000181087' => array(
'start' => '38945543',
'end' => '38951313',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26514-201'
),
'ENSDART00000149025' => array(
'start' => '8288604',
'end' => '8305014',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'slc35b3-002'
),
'ENSDART00000149662' => array(
'start' => '8301953',
'end' => '8304947',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'slc35b3-003'
),
'ENSDART00000150055' => array(
'start' => '8288596',
'end' => '8307832',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'slc35b3-001'
),
'ENSDART00000082346' => array(
'start' => '8521277',
'end' => '8529215',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2a-201'
),
'ENSDART00000082349' => array(
'start' => '8521274',
'end' => '8530614',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2a-202'
),
'ENSDART00000082351' => array(
'start' => '8521274',
'end' => '8532116',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'tfap2a-203'
),
'ENSDART00000125114' => array(
'start' => '125961',
'end' => '205798',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1 (2 of 2)-201'
),
'ENSDART00000112094' => array(
'start' => '22627',
'end' => '70442',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OFCC1 (1 of 2)-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007NC_0001' => array(
'genes_in_region' => array(
'ENSG00000124786' => array(
[maximum depth reached]
),
'ENSG00000137203' => array(
[maximum depth reached]
),
'ENSG00000216368' => array(
[maximum depth reached]
),
'ENSG00000216781' => array(
[maximum depth reached]
),
'ENSG00000225775' => array(
[maximum depth reached]
),
'ENSG00000229765' => array(
[maximum depth reached]
),
'ENSG00000230939' => array(
[maximum depth reached]
),
'ENSG00000232234' => array(
[maximum depth reached]
),
'ENSG00000234763' => array(
[maximum depth reached]
),
'ENSG00000251164' => array(
[maximum depth reached]
),
'ENSG00000275271' => array(
[maximum depth reached]
),
'ENSG00000276019' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Bladder',
(int) 15 => 'Adipose',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 22 => 'Adipose',
(int) 23 => 'Bladder',
(int) 24 => 'Lung',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Liver',
(int) 29 => 'Bladder',
(int) 30 => 'Adipose',
(int) 31 => 'Colon',
(int) 32 => 'Ovary',
(int) 33 => 'Placenta',
(int) 34 => 'Lung',
(int) 35 => 'Ovary',
(int) 36 => 'Testis',
(int) 37 => 'Breast',
(int) 38 => 'Colon',
(int) 39 => 'Placenta',
(int) 40 => 'Testis',
(int) 41 => 'Adrenal',
(int) 42 => 'Heart',
(int) 43 => 'Breast',
(int) 44 => 'Bladder',
(int) 45 => 'Adrenal',
(int) 46 => 'Colon',
(int) 47 => 'Heart',
(int) 48 => 'Kidney',
(int) 49 => 'Ovary',
(int) 50 => 'Placenta',
(int) 51 => 'Testis',
(int) 52 => 'Liver',
(int) 53 => 'Heart',
(int) 54 => 'Testis',
(int) 55 => 'Ovary',
(int) 56 => 'Ovary',
(int) 57 => 'Testis',
(int) 58 => 'Placenta',
(int) 59 => 'Adrenal',
(int) 60 => 'Bladder',
(int) 61 => 'Brain',
(int) 62 => 'Breast',
(int) 63 => 'Heart',
(int) 64 => 'Muscle',
(int) 65 => 'Ovary',
(int) 66 => 'Testis',
(int) 67 => 'Liver',
(int) 68 => 'Ovary',
(int) 69 => 'Ovary',
(int) 70 => 'Testis',
(int) 71 => 'Placenta',
(int) 72 => 'Bladder',
(int) 73 => 'Ovary',
(int) 74 => 'Testis',
(int) 75 => 'Liver',
(int) 76 => 'Adrenal',
(int) 77 => 'Brain',
(int) 78 => 'Breast',
(int) 79 => 'Muscle',
(int) 80 => 'Brain',
(int) 81 => 'Kidney',
(int) 82 => 'Testis',
(int) 83 => 'Adipose',
(int) 84 => 'Colon',
(int) 85 => 'Heart',
(int) 86 => 'Lung',
(int) 87 => 'Placenta',
(int) 88 => 'Testis',
(int) 89 => 'Adipose',
(int) 90 => 'Adrenal',
(int) 91 => 'Brain',
(int) 92 => 'Breast',
(int) 93 => 'Colon',
(int) 94 => 'Heart',
(int) 95 => 'Kidney',
(int) 96 => 'Lung',
(int) 97 => 'Ovary',
(int) 98 => 'Placenta',
(int) 99 => 'Testis',
(int) 100 => 'Kidney',
(int) 101 => 'Placenta',
(int) 102 => 'Testis',
(int) 103 => 'Adipose',
(int) 104 => 'Colon',
(int) 105 => 'Placenta',
(int) 106 => 'Testis',
(int) 107 => 'Breast',
(int) 108 => 'Heart',
(int) 109 => 'Kidney',
(int) 110 => 'Liver',
(int) 111 => 'Lung',
(int) 112 => 'Ovary',
(int) 113 => 'Adipose',
(int) 114 => 'Adrenal',
(int) 115 => 'Brain',
(int) 116 => 'Breast',
(int) 117 => 'Heart',
(int) 118 => 'Kidney',
(int) 119 => 'Liver',
(int) 120 => 'Lung',
(int) 121 => 'Ovary',
(int) 122 => 'Testis',
(int) 123 => 'Adrenal',
(int) 124 => 'Brain',
(int) 125 => 'Liver',
(int) 126 => 'Placenta',
(int) 127 => 'Testis'
)
),
'CIL_0007NC_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000021359' => array(
[maximum depth reached]
),
'ENSMUSG00000021432' => array(
[maximum depth reached]
),
'ENSMUSG00000047094' => array(
[maximum depth reached]
),
'ENSMUSG00000055732' => array(
[maximum depth reached]
),
'ENSMUSG00000087909' => array(
[maximum depth reached]
),
'ENSMUSG00000096932' => array(
[maximum depth reached]
),
'ENSMUSG00000097151' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Kidney',
(int) 5 => 'Lung',
(int) 6 => 'Placenta',
(int) 7 => 'Testis',
(int) 8 => 'Adipose',
(int) 9 => 'Adrenal',
(int) 10 => 'Bladder',
(int) 11 => 'Brain',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Heart',
(int) 15 => 'Kidney',
(int) 16 => 'Liver',
(int) 17 => 'Lung',
(int) 18 => 'Muscle',
(int) 19 => 'Ovary',
(int) 20 => 'Placenta',
(int) 21 => 'Testis',
(int) 22 => 'Adrenal',
(int) 23 => 'Kidney',
(int) 24 => 'Adipose',
(int) 25 => 'Adrenal',
(int) 26 => 'Bladder',
(int) 27 => 'Brain',
(int) 28 => 'Breast',
(int) 29 => 'Colon',
(int) 30 => 'Heart',
(int) 31 => 'Kidney',
(int) 32 => 'Liver',
(int) 33 => 'Lung',
(int) 34 => 'Muscle',
(int) 35 => 'Ovary',
(int) 36 => 'Placenta',
(int) 37 => 'Testis',
(int) 38 => 'Adipose',
(int) 39 => 'Bladder',
(int) 40 => 'Brain',
(int) 41 => 'Breast',
(int) 42 => 'Kidney',
(int) 43 => 'Liver',
(int) 44 => 'Lung',
(int) 45 => 'Muscle',
(int) 46 => 'Ovary',
(int) 47 => 'Placenta',
(int) 48 => 'Testis',
(int) 49 => 'Bladder',
(int) 50 => 'Brain',
(int) 51 => 'Placenta',
(int) 52 => 'Testis',
(int) 53 => 'Brain',
(int) 54 => 'Testis',
(int) 55 => 'Adipose',
(int) 56 => 'Adrenal',
(int) 57 => 'Bladder',
(int) 58 => 'Brain',
(int) 59 => 'Breast',
(int) 60 => 'Colon',
(int) 61 => 'Heart',
(int) 62 => 'Kidney',
(int) 63 => 'Liver',
(int) 64 => 'Lung',
(int) 65 => 'Muscle',
(int) 66 => 'Ovary',
(int) 67 => 'Placenta',
(int) 68 => 'Testis'
)
),
'CIL_0007NC_0003' => array(
'genes_in_region' => array(
'ENSDARG00000045437' => array(
[maximum depth reached]
),
'ENSDARG00000059279' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Muscle',
(int) 10 => 'Brain',
(int) 11 => 'Heart',
(int) 12 => 'Muscle',
(int) 13 => 'Brain',
(int) 14 => 'Heart',
(int) 15 => 'Liver',
(int) 16 => 'Brain',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver'
)
),
'CIL_0007NC_0004' => array(
'genes_in_region' => array(
'ENSDARG00000089100' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Muscle'
)
),
'CIL_0007NC_0005' => array(
'genes_in_region' => array(
'ENSDARG00000074416' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Muscle'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007NC_0007',
'tax_id' => '7955',
'chromosome' => 'Zv9_NA822',
'seq_start' => '54938',
'seq_end' => '55292',
'region_length' => '354',
'region_type' => 'UCNEbase',
'el_id' => 'TFAP2A'
)
)
$gene_el = array(
'ENSDART00000112094' => array(
'Brain' => array(
'average_FPKM' => '0.433',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.087',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '0.050',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.044',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSDARG00000074416'
$is_first = false
$tran_el = array(
'Brain' => array(
'average_FPKM' => '0.433',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.087',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '0.050',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.044',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSDART00000112094'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(SLC35B3)