C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GINS complex subunit 3 (Psf3 homolog)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000181938 GINS3 9606 + 16:58295080-58406144 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000318129 GINS3-001 58392394-58406144 protein_coding
  ENST00000328514 GINS3-002 58392394-58406036 protein_coding
  ENST00000426538 GINS3-003 58392394-58405481 protein_coding
  ENST00000561952 GINS3-009 58295116-58386781 processed_transcript
  ENST00000564814 GINS3-006 58295397-58392574 processed_transcript
  ENST00000567143 GINS3-004 58402942-58406143 retained_intron
  ENST00000567400 GINS3-007 58295080-58299973 processed_transcript
  ENST00000567432 GINS3-010 58368044-58386702 processed_transcript
  ENST00000567909 GINS3-005 58392698-58393673 processed_transcript
  ENST00000568468 GINS3-008 58295189-58387370 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000318129ENST00000328514ENST00000426538ENST00000567143ENST00000567432ENST00000568468
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000318129 0.902±0.00 0.456±0.00 N/A 0.311±0.00 0.368±0.00 0.355±0.00 1.440±0.00 N/A N/A 0.400±0.00 N/A 1.224±0.76 2.786±1.05 1.580±0.49
ENST00000328514 0.643±0.00 1.100±0.00 N/A 0.523±0.00 0.257±0.00 0.417±0.00 0.826±0.10 1.132±0.00 0.615±0.00 0.318±0.12 N/A 0.853±0.26 1.371±0.39 1.602±0.04
ENST00000426538 N/A 0.645±0.00 0.133±0.00 0.490±0.00 N/A 0.266±0.08 N/A N/A 0.157±0.00 0.298±0.00 0.111±0.00 1.512±0.72 N/A 2.698±0.00
ENST00000567143 N/A N/A N/A N/A 0.078±0.05 N/A N/A N/A N/A N/A N/A 0.330±0.00 N/A N/A
ENST00000567432 N/A N/A N/A 1.619±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568468 N/A N/A N/A 0.878±0.16 N/A 0.364±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Z0 CIL_0008Z0_0001 VISTA 16:57818949-58421282
CIL_0004RU CIL_0004RU_0001 CGP 16:58279997-58406144
CIL_0004IX CIL_0004IX_0001 CGP 16:58295080-58513628

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0006260 IEA DNA replication

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038847 gins3 GINS complex subunit 3 protein_coding Danio_rerio
ENSMUSG00000031669 Gins3 GINS complex subunit 3 (Psf3 homolog) protein_coding Mus_musculus

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