C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004RU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000103023-ENSG00000181938 CGP 9606 16:58279997-58406144
GeneTranscriptPositionBiotype
ENSG00000103021 (CCDC113)
coiled-coil domain containing 113 		ENST00000219299 (CCDC113-001) 58249936-58283836 protein_coding
ENST00000443128 (CCDC113-002) 58249936-58283836 protein_coding
ENST00000561517 (CCDC113-004) 58249952-58262540 nonsense_mediated_decay
ENST00000566498 (CCDC113-003) 58249988-58252767 processed_transcript
ENST00000569374 (CCDC113-005) 58231157-58254096 protein_coding
ENST00000616795 (CCDC113-201) 58249977-58267549 protein_coding
ENSG00000181938 (GINS3)
GINS complex subunit 3 (Psf3 homolog) 		ENST00000318129 (GINS3-001) 58392394-58406144 protein_coding
ENST00000328514 (GINS3-002) 58392394-58406036 protein_coding
ENST00000426538 (GINS3-003) 58392394-58405481 protein_coding
ENST00000561952 (GINS3-009) 58295116-58386781 processed_transcript
ENST00000564814 (GINS3-006) 58295397-58392574 processed_transcript
ENST00000567143 (GINS3-004) 58402942-58406143 retained_intron
ENST00000567400 (GINS3-007) 58295080-58299973 processed_transcript
ENST00000567432 (GINS3-010) 58368044-58386702 processed_transcript
ENST00000567909 (GINS3-005) 58392698-58393673 processed_transcript
ENST00000568468 (GINS3-008) 58295189-58387370 processed_transcript
ENSG00000252271 (RNU6-1110P)
RNA, U6 small nuclear 1110, pseudogene 		ENST00000516462 (RNU6-1110P-201) 58384442-58384542 snRNA
ENSG00000261078 (RP11-481J2.1)
 ENST00000566019 (RP11-481J2.1-001) 58382989-58383798 antisense
ENSG00000276131 (RP11-481J2.3)
 ENST00000613275 (RP11-481J2.3-001) 58392153-58392807 antisense
CIL_0004RU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000048400-ENSMUSG00000031669 CGP 10090 8:95559133-95645059
GeneTranscriptPositionBiotype
ENSMUSG00000031669 (Gins3)
GINS complex subunit 3 (Psf3 homolog) 		ENSMUST00000034094 (Gins3-201) 95633559-95645059 protein_coding
ENSMUSG00000048400 (Prss54)
protease, serine 54 		ENSMUST00000052690 (Prss54-201) 95559133-95575455 protein_coding
ENSMUST00000180075 (Prss54-202) 95559292-95575197 protein_coding
ENSMUSG00000081436 (Gm5912)
predicted gene 5912 		ENSMUST00000122282 (Gm5912-001) 95577471-95578908 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004RU_0001ENSG00000103021ENST00000219299ENST00000443128ENST00000561517ENST00000566498ENST00000569374ENST00000616795ENSG00000181938ENST00000318129ENST00000328514ENST00000426538ENST00000561952ENST00000564814ENST00000567143ENST00000567400ENST00000567432ENST00000567909ENST00000568468ENSG00000252271ENST00000516462ENSG00000261078ENST00000566019ENSG00000276131ENST00000613275CIL_0004RU_0002ENSMUSG00000031669ENSMUST00000034094ENSMUSG00000048400ENSMUST00000052690ENSMUST00000180075ENSMUSG00000081436ENSMUST00000122282
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004RU_0001ENSG00000103021ENST00000219299ENST00000443128ENST00000616795ENSG00000181938ENST00000318129ENST00000328514ENST00000426538ENST00000567143ENST00000567432ENST00000568468ENSG00000252271ENST00000516462ENSG00000261078ENST00000566019ENSG00000276131ENST00000613275CIL_0004RU_0002ENSMUSG00000031669ENSMUST00000034094ENSMUSG00000048400ENSMUST00000052690ENSMUST00000180075ENSMUSG00000081436ENSMUST00000122282
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000103021 ENST00000219299 0.246±0.00 0.638±0.00 0.103±0.00 3.819±0.68 0.724±0.03 0.228±0.05 0.450±0.00 0.213±0.19 0.265±0.11 2.932±1.28 0.404±0.00 2.277±2.01 0.667±0.15 10.190±5.57
ENST00000443128 N/A N/A N/A N/A N/A N/A 0.435±0.00 N/A 0.375±0.00 N/A 0.237±0.00 N/A N/A N/A
ENST00000561517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566498 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569374 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616795 N/A N/A N/A 3.003±0.00 N/A 0.142±0.00 0.460±0.00 0.427±0.26 0.881±0.00 1.502±0.00 1.140±0.00 0.433±0.00 N/A N/A
ENSG00000181938 ENST00000318129 0.902±0.00 0.456±0.00 N/A 0.311±0.00 0.368±0.00 0.355±0.00 1.440±0.00 N/A N/A 0.400±0.00 N/A 1.224±0.76 2.786±1.05 1.580±0.49
ENST00000328514 0.643±0.00 1.100±0.00 N/A 0.523±0.00 0.257±0.00 0.417±0.00 0.826±0.10 1.132±0.00 0.615±0.00 0.318±0.12 N/A 0.853±0.26 1.371±0.39 1.602±0.04
ENST00000426538 N/A 0.645±0.00 0.133±0.00 0.490±0.00 N/A 0.266±0.08 N/A N/A 0.157±0.00 0.298±0.00 0.111±0.00 1.512±0.72 N/A 2.698±0.00
ENST00000561952 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564814 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567143 N/A N/A N/A N/A 0.078±0.05 N/A N/A N/A N/A N/A N/A 0.330±0.00 N/A N/A
ENST00000567400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567432 N/A N/A N/A 1.619±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567909 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568468 N/A N/A N/A 0.878±0.16 N/A 0.364±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000252271 ENST00000516462 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.438±0.00
ENSG00000261078 ENST00000566019 0.042±0.00 0.307±0.00 N/A N/A 0.180±0.00 0.083±0.00 0.040±0.00 0.222±0.00 1.185±0.00 N/A N/A 0.218±0.00 N/A 0.645±0.15
ENSG00000276131 ENST00000613275 2.149±0.00 N/A N/A N/A 0.390±0.00 N/A N/A N/A N/A 0.990±0.00 N/A 1.742±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031669 ENSMUST00000034094 0.942±0.40 0.716±0.23 1.424±0.30 1.422±0.28 0.688±0.30 0.647±0.12 0.327±0.07 0.460±0.08 1.498±1.60 0.598±0.13 0.339±0.08 1.223±0.42 2.663±0.94 0.791±0.29
ENSMUSG00000048400 ENSMUST00000052690 N/A N/A N/A 0.079±0.00 0.046±0.02 0.093±0.05 0.022±0.00 0.051±0.03 N/A 0.046±0.00 N/A N/A N/A 55.120±26.82
ENSMUST00000180075 N/A N/A N/A N/A N/A N/A 0.025±0.00 N/A N/A 0.077±0.04 N/A 0.130±0.00 0.021±0.02 N/A
ENSMUSG00000081436 ENSMUST00000122282 N/A N/A N/A 0.009±0.00 N/A N/A N/A N/A N/A N/A N/A 0.047±0.01 N/A 2.329±1.62

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