C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004IX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000181938-ENSG00000103034 CGP 9606 16:58295080-58513628
GeneTranscriptPositionBiotype
ENSG00000103034 (NDRG4)
NDRG family member 4 		ENST00000258187 (NDRG4-001) 58463665-58513628 protein_coding
ENST00000356752 (NDRG4-007) 58500143-58511735 protein_coding
ENST00000394279 (NDRG4-201) 58464822-58513618 protein_coding
ENST00000394282 (NDRG4-002) 58464024-58513619 protein_coding
ENST00000421602 (NDRG4-003) 58464301-58513413 retained_intron
ENST00000561681 (NDRG4-020) 58506924-58511558 retained_intron
ENST00000561720 (NDRG4-037) 58495456-58507197 retained_intron
ENST00000561724 (NDRG4-038) 58472187-58504633 protein_coding
ENST00000561730 (NDRG4-015) 58507728-58509389 retained_intron
ENST00000561738 (NDRG4-043) 58503833-58507819 protein_coding
ENST00000561779 (NDRG4-045) 58464304-58504240 protein_coding
ENST00000562350 (NDRG4-016) 58507499-58509177 retained_intron
ENST00000562725 (NDRG4-041) 58463716-58506956 processed_transcript
ENST00000562731 (NDRG4-029) 58500145-58504381 protein_coding
ENST00000562764 (NDRG4-032) 58463631-58504258 nonsense_mediated_decay
ENST00000562930 (NDRG4-031) 58500143-58504385 nonsense_mediated_decay
ENST00000562999 (NDRG4-010) 58500143-58513417 protein_coding
ENST00000563022 (NDRG4-023) 58500143-58504259 processed_transcript
ENST00000563209 (NDRG4-014) 58510711-58513410 retained_intron
ENST00000563317 (NDRG4-024) 58500143-58501395 retained_intron
ENST00000563799 (NDRG4-004) 58500143-58513410 protein_coding
ENST00000563978 (NDRG4-027) 58500143-58506409 protein_coding
ENST00000564126 (NDRG4-033) 58463713-58506461 protein_coding
ENST00000564207 (NDRG4-040) 58463370-58504642 protein_coding
ENST00000564486 (NDRG4-052) 58465042-58504661 protein_coding
ENST00000564867 (NDRG4-050) 58464282-58504254 nonsense_mediated_decay
ENST00000564960 (NDRG4-022) 58500145-58506435 retained_intron
ENST00000565088 (NDRG4-044) 58500090-58504618 protein_coding
ENST00000565304 (NDRG4-054) 58463723-58504661 protein_coding
ENST00000565430 (NDRG4-051) 58464306-58504265 protein_coding
ENST00000565434 (NDRG4-048) 58464774-58504607 protein_coding
ENST00000565981 (NDRG4-012) 58505989-58513413 retained_intron
ENST00000566041 (NDRG4-047) 58464313-58495008 protein_coding
ENST00000566061 (NDRG4-042) 58464318-58511460 nonsense_mediated_decay
ENST00000566065 (NDRG4-034) 58464282-58503876 processed_transcript
ENST00000566192 (NDRG4-008) 58500047-58513619 protein_coding
ENST00000566265 (NDRG4-013) 58509149-58513415 retained_intron
ENST00000566585 (NDRG4-021) 58500145-58504733 retained_intron
ENST00000566618 (NDRG4-026) 58501503-58506590 protein_coding
ENST00000566656 (NDRG4-025) 58501468-58504636 protein_coding
ENST00000567063 (NDRG4-053) 58464306-58506431 protein_coding
ENST00000567454 (NDRG4-035) 58464282-58504277 protein_coding
ENST00000567667 (NDRG4-049) 58463725-58504629 protein_coding
ENST00000568005 (NDRG4-017) 58506121-58507962 retained_intron
ENST00000568424 (NDRG4-030) 58500146-58504192 protein_coding
ENST00000568464 (NDRG4-028) 58500143-58504254 nonsense_mediated_decay
ENST00000568640 (NDRG4-006) 58500107-58511641 protein_coding
ENST00000568999 (NDRG4-039) 58462846-58504649 protein_coding
ENST00000569026 (NDRG4-019) 58506382-58511558 protein_coding
ENST00000569404 (NDRG4-046) 58463704-58504397 protein_coding
ENST00000569408 (NDRG4-018) 58506980-58511932 protein_coding
ENST00000569539 (NDRG4-055) 58463710-58506946 protein_coding
ENST00000569578 (NDRG4-036) 58464301-58499398 processed_transcript
ENST00000569923 (NDRG4-005) 58500143-58511670 protein_coding
ENST00000570248 (NDRG4-009) 58500143-58513618 protein_coding
ENSG00000181938 (GINS3)
GINS complex subunit 3 (Psf3 homolog) 		ENST00000318129 (GINS3-001) 58392394-58406144 protein_coding
ENST00000328514 (GINS3-002) 58392394-58406036 protein_coding
ENST00000426538 (GINS3-003) 58392394-58405481 protein_coding
ENST00000561952 (GINS3-009) 58295116-58386781 processed_transcript
ENST00000564814 (GINS3-006) 58295397-58392574 processed_transcript
ENST00000567143 (GINS3-004) 58402942-58406143 retained_intron
ENST00000567400 (GINS3-007) 58295080-58299973 processed_transcript
ENST00000567432 (GINS3-010) 58368044-58386702 processed_transcript
ENST00000567909 (GINS3-005) 58392698-58393673 processed_transcript
ENST00000568468 (GINS3-008) 58295189-58387370 processed_transcript
ENSG00000200556 (RNU6-103P)
RNA, U6 small nuclear 103, pseudogene 		ENST00000363686 (RNU6-103P-201) 58496908-58497014 snRNA
ENSG00000252271 (RNU6-1110P)
RNA, U6 small nuclear 1110, pseudogene 		ENST00000516462 (RNU6-1110P-201) 58384442-58384542 snRNA
ENSG00000260186 (RP11-481J2.2)
 ENST00000561906 (RP11-481J2.2-001) 58421339-58462470 lincRNA
ENST00000562322 (RP11-481J2.2-003) 58421326-58436169 lincRNA
ENST00000567448 (RP11-481J2.2-002) 58421361-58450695 lincRNA
ENSG00000261078 (RP11-481J2.1)
 ENST00000566019 (RP11-481J2.1-001) 58382989-58383798 antisense
ENSG00000276131 (RP11-481J2.3)
 ENST00000613275 (RP11-481J2.3-001) 58392153-58392807 antisense
CIL_0004IX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031669-ENSMUSG00000036564 CGP 10090 8:95633559-95715119
GeneTranscriptPositionBiotype
ENSMUSG00000031669 (Gins3)
GINS complex subunit 3 (Psf3 homolog) 		ENSMUST00000034094 (Gins3-201) 95633559-95645059 protein_coding
ENSMUSG00000036564 (Ndrg4)
N-myc downstream regulated gene 4 		ENSMUST00000041318 (Ndrg4-003) 95678085-95714956 protein_coding
ENSMUST00000073139 (Ndrg4-001) 95703037-95715119 protein_coding
ENSMUST00000080666 (Ndrg4-002) 95703063-95714956 protein_coding
ENSMUST00000159632 (Ndrg4-008) 95710466-95711551 retained_intron
ENSMUST00000159851 (Ndrg4-006) 95709110-95711642 retained_intron
ENSMUST00000160915 (Ndrg4-005) 95706574-95711144 processed_transcript
ENSMUST00000160964 (Ndrg4-004) 95676980-95709144 protein_coding
ENSMUST00000161314 (Ndrg4-009) 95711897-95713215 retained_intron
ENSMUST00000162578 (Ndrg4-007) 95709907-95713918 processed_transcript
ENSMUST00000166358 (Ndrg4-010) 95678245-95714952 nonsense_mediated_decay

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004IX_0001ENSG00000103034ENST00000258187ENST00000394282ENST00000561738ENST00000562999ENST00000563209ENST00000563317ENST00000565981ENST00000566192ENST00000566265ENST00000566585ENST00000568005ENST00000569026ENST00000569408ENST00000570248ENSG00000181938ENST00000318129ENST00000328514ENST00000426538ENST00000567143ENST00000567432ENST00000568468ENSG00000200556ENST00000363686ENSG00000252271ENST00000516462ENSG00000260186ENST00000561906ENST00000562322ENST00000567448ENSG00000261078ENST00000566019ENSG00000276131ENST00000613275CIL_0004IX_0002ENSMUSG00000031669ENSMUST00000034094ENSMUSG00000036564ENSMUST00000041318ENSMUST00000073139ENSMUST00000080666ENSMUST00000160915ENSMUST00000160964ENSMUST00000162578ENSMUST00000166358
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000103034 ENST00000258187 6.074±0.00 0.751±0.00 N/A N/A 0.835±0.00 N/A 57.762±46.96 N/A 0.541±0.00 4.587±0.00 N/A 0.479±0.20 1.009±0.00 21.708±7.30
ENST00000356752 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000394279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000394282 N/A N/A N/A N/A N/A N/A 7.274±0.00 N/A N/A N/A N/A N/A 0.190±0.00 N/A
ENST00000421602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561681 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561730 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561738 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.039±0.00 N/A N/A N/A
ENST00000561779 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562350 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562731 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562930 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562999 N/A N/A N/A 20.610±0.00 N/A 0.192±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563022 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563209 N/A N/A N/A N/A 0.563±0.00 N/A N/A N/A N/A N/A N/A 0.519±0.09 0.481±0.02 N/A
ENST00000563317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.164±0.00 N/A N/A
ENST00000563799 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563978 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564126 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564207 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564486 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564867 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564960 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565088 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565304 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565430 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565434 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565981 N/A 0.761±0.00 0.170±0.00 N/A N/A N/A N/A 0.479±0.00 0.593±0.00 N/A N/A N/A N/A N/A
ENST00000566041 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566061 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566065 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566192 N/A N/A N/A 20.328±0.00 0.267±0.00 N/A N/A N/A N/A N/A N/A 0.993±0.00 N/A N/A
ENST00000566265 8.404±0.00 2.737±0.00 N/A 88.261±54.62 1.371±0.00 2.847±2.42 60.949±49.79 2.401±0.00 0.577±0.00 5.094±0.00 0.412±0.28 0.838±0.32 1.038±0.33 22.919±4.36
ENST00000566585 N/A N/A N/A N/A N/A 1.990±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566618 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566656 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567063 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567454 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567667 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568005 N/A N/A 0.693±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568424 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568464 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569026 N/A N/A 0.439±0.00 N/A N/A 1.319±0.00 N/A N/A N/A N/A N/A 0.762±0.00 N/A N/A
ENST00000569404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569408 N/A N/A N/A N/A 1.730±0.00 1.783±0.00 N/A N/A N/A N/A 1.027±0.00 N/A N/A N/A
ENST00000569539 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570248 N/A N/A 0.050±0.00 97.233±0.00 N/A 1.591±0.00 N/A 0.566±0.00 0.164±0.00 N/A N/A 0.610±0.00 N/A N/A
ENSG00000181938 ENST00000318129 0.902±0.00 0.456±0.00 N/A 0.311±0.00 0.368±0.00 0.355±0.00 1.440±0.00 N/A N/A 0.400±0.00 N/A 1.224±0.76 2.786±1.05 1.580±0.49
ENST00000328514 0.643±0.00 1.100±0.00 N/A 0.523±0.00 0.257±0.00 0.417±0.00 0.826±0.10 1.132±0.00 0.615±0.00 0.318±0.12 N/A 0.853±0.26 1.371±0.39 1.602±0.04
ENST00000426538 N/A 0.645±0.00 0.133±0.00 0.490±0.00 N/A 0.266±0.08 N/A N/A 0.157±0.00 0.298±0.00 0.111±0.00 1.512±0.72 N/A 2.698±0.00
ENST00000561952 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564814 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567143 N/A N/A N/A N/A 0.078±0.05 N/A N/A N/A N/A N/A N/A 0.330±0.00 N/A N/A
ENST00000567400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567432 N/A N/A N/A 1.619±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567909 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568468 N/A N/A N/A 0.878±0.16 N/A 0.364±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000200556 ENST00000363686 0.197±0.00 N/A N/A N/A N/A N/A 3.602±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000252271 ENST00000516462 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.438±0.00
ENSG00000260186 ENST00000561906 0.139±0.00 0.209±0.00 N/A 0.329±0.00 0.347±0.00 0.086±0.00 N/A 0.092±0.00 0.026±0.00 0.057±0.00 0.026±0.00 0.053±0.01 0.062±0.00 0.848±0.10
ENST00000562322 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.085±0.00 N/A 0.204±0.05
ENST00000567448 N/A N/A N/A N/A N/A N/A 0.209±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000261078 ENST00000566019 0.042±0.00 0.307±0.00 N/A N/A 0.180±0.00 0.083±0.00 0.040±0.00 0.222±0.00 1.185±0.00 N/A N/A 0.218±0.00 N/A 0.645±0.15
ENSG00000276131 ENST00000613275 2.149±0.00 N/A N/A N/A 0.390±0.00 N/A N/A N/A N/A 0.990±0.00 N/A 1.742±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031669 ENSMUST00000034094 0.942±0.40 0.716±0.23 1.424±0.30 1.422±0.28 0.688±0.30 0.647±0.12 0.327±0.07 0.460±0.08 1.498±1.60 0.598±0.13 0.339±0.08 1.223±0.42 2.663±0.94 0.791±0.29
ENSMUSG00000036564 ENSMUST00000041318 N/A 3.027±0.30 N/A 134.325±0.00 N/A N/A N/A 1.713±0.36 N/A N/A 0.394±0.00 N/A 0.815±0.00 1.572±0.30
ENSMUST00000073139 3.238±0.00 3.740±0.27 6.197±0.84 N/A N/A 6.988±0.93 135.952±47.21 N/A 0.033±0.01 3.205±0.76 0.235±0.00 N/A N/A N/A
ENSMUST00000080666 7.606±1.68 7.751±1.97 13.907±2.05 176.590±110.02 7.733±2.17 4.243±0.66 N/A 5.045±0.63 0.483±0.38 4.198±0.13 0.491±0.21 9.986±4.67 2.358±1.57 7.564±1.10
ENSMUST00000159632 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159851 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160915 N/A N/A N/A N/A N/A N/A N/A N/A 0.143±0.09 N/A N/A N/A N/A N/A
ENSMUST00000160964 N/A 5.989±0.31 N/A N/A N/A N/A N/A N/A 0.029±0.00 N/A N/A N/A N/A N/A
ENSMUST00000161314 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162578 N/A 17.057±4.20 N/A N/A N/A 7.077±1.75 N/A N/A 0.077±0.04 3.013±0.00 0.356±0.08 7.475±1.45 N/A N/A
ENSMUST00000166358 N/A 5.884±1.64 N/A N/A N/A N/A N/A N/A N/A N/A 0.227±0.00 N/A N/A N/A

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