C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: mitochondrial ribosomal protein S11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000181991 MRPS11 9606 + 15:88467453-88480773 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000325844 MRPS11-001 88467453-88480773 protein_coding
  ENST00000353598 MRPS11-002 88467718-88478259 protein_coding
  ENST00000557974 MRPS11-007 88467705-88477904 processed_transcript
  ENST00000558406 MRPS11-010 88467736-88478205 retained_intron
  ENST00000558548 MRPS11-006 88472507-88478267 retained_intron
  ENST00000559125 MRPS11-011 88467678-88468258 retained_intron
  ENST00000559323 MRPS11-008 88467706-88478263 retained_intron
  ENST00000559557 MRPS11-005 88467963-88472620 retained_intron
  ENST00000560708 MRPS11-004 88467453-88478251 nonsense_mediated_decay
  ENST00000560850 MRPS11-009 88467708-88472620 retained_intron
  ENST00000561262 MRPS11-003 88476725-88478267 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000325844ENST00000557974ENST00000558406ENST00000559323ENST00000559557ENST00000560708ENST00000560850
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000325844 0.770±0.00 N/A N/A 1.213±0.00 0.582±0.35 N/A 0.649±0.51 1.477±0.00 N/A 0.221±0.00 0.450±0.00 1.001±0.16 1.277±0.00 0.964±0.00
ENST00000557974 7.541±0.00 9.574±0.00 N/A 10.371±0.00 11.539±0.00 9.836±0.00 N/A 11.721±0.00 10.963±0.00 3.400±0.00 4.060±0.00 N/A 7.939±0.00 11.663±4.62
ENST00000558406 5.895±0.00 4.262±0.00 2.299±0.00 7.474±1.81 6.181±3.99 7.693±0.00 7.039±5.16 4.593±3.43 5.985±5.27 1.542±0.81 6.259±1.59 5.877±2.87 11.193±2.58 9.274±1.87
ENST00000559323 N/A 1.222±0.00 0.565±0.00 N/A N/A 0.396±0.00 0.216±0.00 0.220±0.00 0.440±0.00 N/A N/A 1.313±0.00 N/A N/A
ENST00000559557 N/A N/A N/A N/A 1.574±0.00 N/A N/A N/A N/A N/A N/A 5.089±0.00 N/A 3.155±0.00
ENST00000560708 N/A N/A N/A 2.326±0.00 N/A N/A 0.552±0.00 0.506±0.00 0.927±0.00 N/A N/A 0.728±0.00 N/A N/A
ENST00000560850 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.693±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00011G CIL_00011G_0001 CGP 15:88459476-88480773
CIL_00011H CIL_00011H_0001 CGP 15:88467453-88546675

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005739 IDA mitochondrion
GO:0005763 ISS mitochondrial small ribosomal subunit
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0042769 NAS DNA damage response, detection of DNA damage
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075129 mrps11 mitochondrial ribosomal protein S11 protein_coding Danio_rerio
ENSMUSG00000030611 Mrps11 mitochondrial ribosomal protein S11 protein_coding Mus_musculus

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