C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: EWS RNA-binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000182944 EWSR1 9606 + 22:29268009-29300525 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000331029 EWSR1-007 29268291-29300525 protein_coding
  ENST00000332035 EWSR1-008 29268326-29300336 protein_coding
  ENST00000332050 EWSR1-201 29268009-29300522 protein_coding
  ENST00000333395 EWSR1-004 29268318-29290684 protein_coding
  ENST00000360091 EWSR1-019 29292159-29300525 protein_coding
  ENST00000397938 EWSR1-001 29268018-29300525 protein_coding
  ENST00000406548 EWSR1-002 29268273-29300336 protein_coding
  ENST00000414183 EWSR1-021 29268316-29300343 protein_coding
  ENST00000415761 EWSR1-017 29268290-29287106 protein_coding
  ENST00000436425 EWSR1-012 29268253-29282424 protein_coding
  ENST00000437155 EWSR1-013 29268282-29288687 protein_coding
  ENST00000444626 EWSR1-016 29268009-29278041 protein_coding
  ENST00000447973 EWSR1-014 29268253-29282456 protein_coding
  ENST00000455726 EWSR1-018 29268326-29288679 protein_coding
  ENST00000469669 EWSR1-009 29290830-29300525 retained_intron
  ENST00000479135 EWSR1-005 29275629-29300525 retained_intron
  ENST00000483415 EWSR1-006 29268313-29291019 retained_intron
  ENST00000483629 EWSR1-010 29291929-29300525 retained_intron
  ENST00000485037 EWSR1-003 29268273-29274453 retained_intron
  ENST00000493426 EWSR1-015 29269223-29273792 retained_intron
  ENST00000610553 EWSR1-011 29295526-29300336 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000331029ENST00000332035ENST00000360091ENST00000406548ENST00000414183ENST00000469669ENST00000479135ENST00000483415
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000331029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.318±0.00 16.489±0.00 21.232±5.38 N/A
ENST00000332035 35.573±0.00 63.760±0.00 N/A 22.058±15.46 28.884±0.00 19.859±0.00 10.333±7.77 24.275±0.00 14.362±0.00 19.488±0.00 16.826±0.00 44.051±24.88 34.503±20.79 71.846±17.13
ENST00000360091 20.959±0.00 N/A N/A 16.962±10.02 12.468±0.00 N/A N/A N/A N/A N/A N/A 31.151±0.00 N/A 46.001±19.28
ENST00000406548 22.568±0.00 41.171±0.00 N/A 10.980±5.30 10.296±5.51 13.796±6.47 11.173±8.58 12.199±3.91 13.006±4.25 16.124±0.00 13.369±8.09 33.385±17.61 41.694±7.57 60.743±22.07
ENST00000414183 N/A N/A N/A 19.264±0.00 N/A N/A N/A N/A N/A N/A 3.729±0.00 N/A N/A N/A
ENST00000469669 N/A N/A 13.370±0.00 4.719±0.00 5.375±0.00 10.553±0.00 2.057±0.00 8.513±0.00 4.222±0.31 6.389±1.84 N/A 13.589±6.71 N/A N/A
ENST00000479135 N/A N/A N/A 1.672±0.00 2.304±0.00 2.194±0.00 0.803±0.00 N/A 1.298±0.00 2.505±0.00 0.743±0.00 3.100±0.00 N/A N/A
ENST00000483415 N/A N/A N/A N/A 3.563±0.00 3.771±0.00 2.703±1.44 5.237±0.00 N/A 2.979±0.00 N/A 7.042±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS RNA binding
GO:0005515 IPI protein binding
GO:0005516 IEA calmodulin binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0042802 IPI identical protein binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020258 ewsr1a Ewing sarcoma breakpoint region 1a protein_coding Danio_rerio
ENSDARG00000020465 ewsr1b Ewing sarcoma breakpoint region 1b protein_coding Danio_rerio
ENSMUSG00000009079 Ewsr1 Ewing sarcoma breakpoint region 1 protein_coding Mus_musculus

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