C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: EWS RNA-binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000406548 EWSR1-002 ENSG00000182944 9606 + 22:29268273-29300336 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000406548
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000406548 22.568±0.00 41.171±0.00 10.980±5.30 10.296±5.51 13.796±6.47 11.173±8.58 12.199±3.91 13.006±4.25 16.124±0.00 13.369±8.09 33.385±17.61 41.694±7.57 60.743±22.07

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS RNA binding
GO:0005515 IPI protein binding
GO:0005516 IEA calmodulin binding
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0042802 IPI identical protein binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079949 Ewsr1-002 protein_coding Mus_musculus 0 3265
ENSMUST00000102930 Ewsr1-009 protein_coding Mus_musculus 0 3120
ENSMUST00000073308 Ewsr1-007 protein_coding Mus_musculus 0 1559
ENSMUST00000093365 Ewsr1-004 protein_coding Mus_musculus 0 1555
ENSMUST00000144238 Ewsr1-011 processed_transcript Mus_musculus 0 881
ENSMUST00000130118 Ewsr1-003 processed_transcript Mus_musculus 0 678
ENSMUST00000141002 Ewsr1-012 processed_transcript Mus_musculus 0 652
ENSMUST00000139886 Ewsr1-013 processed_transcript Mus_musculus 0 643
ENSMUST00000150168 Ewsr1-006 processed_transcript Mus_musculus 0 580
ENSMUST00000063232 Ewsr1-010 protein_coding Mus_musculus 0 459
ENSMUST00000130060 Ewsr1-005 processed_transcript Mus_musculus 0 444
ENSMUST00000151497 Ewsr1-001 processed_transcript Mus_musculus 0 424
ENSMUST00000151847 Ewsr1-008 processed_transcript Mus_musculus 0 248
ENSMUST00000101610 Rhbdd3-001 protein_coding Mus_musculus 4e-25 121

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