C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DiGeorge syndrome critical region gene 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000183628 DGCR6 9606 + 22:18906028-18914238 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000331444 DGCR6-001 18906223-18912088 protein_coding
  ENST00000413981 DGCR6-002 18906028-18912088 protein_coding
  ENST00000427407 DGCR6-006 18906351-18912082 nonsense_mediated_decay
  ENST00000436645 DGCR6-003 18908663-18912078 processed_transcript
  ENST00000477156 DGCR6-007 18906781-18910389 retained_intron
  ENST00000480608 DGCR6-005 18906355-18912087 nonsense_mediated_decay
  ENST00000483718 DGCR6-004 18906325-18914238 nonsense_mediated_decay
  ENST00000608842 DGCR6-008 18906353-18908269 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000427407ENST00000477156ENST00000480608ENST00000483718ENST00000608842
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000427407 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.748±0.00
ENST00000477156 N/A N/A N/A N/A 1.098±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000480608 N/A N/A N/A N/A 0.119±0.00 N/A N/A N/A 1.009±0.00 N/A 0.245±0.11 N/A
ENST00000483718 N/A 0.132±0.00 1.468±0.00 0.288±0.00 0.243±0.00 0.256±0.00 0.114±0.09 N/A 0.579±0.00 0.287±0.00 0.123±0.04 0.424±0.02
ENST00000608842 0.194±0.00 0.291±0.00 0.871±0.44 0.292±0.04 N/A 0.306±0.10 0.171±0.04 0.336±0.20 0.943±0.00 0.192±0.00 0.144±0.03 0.388±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005EQ CIL_0005EQ_0001 CGP 22:18906028-18936553

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005578 TAS proteinaceous extracellular matrix
GO:0005634 IEA nucleus
GO:0007155 TAS cell adhesion
GO:0009887 TAS organ morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005500 dgcr6 DiGeorge syndrome critical region gene 6 protein_coding Danio_rerio
ENSMUSG00000003531 Dgcr6 DiGeorge syndrome critical region gene 6 protein_coding Mus_musculus

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