C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromobox homolog 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000183741 CBX6 9606 - 22:38861450-38872314 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000216083 CBX6-003 38864229-38872216 protein_coding
  ENST00000407418 CBX6-001 38861450-38872314 protein_coding
  ENST00000469420 CBX6-002 38869572-38872249 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216083ENST00000407418ENST00000469420
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216083 N/A N/A N/A N/A 1.217±0.00 N/A N/A N/A N/A N/A N/A N/A 1.517±0.00 N/A
ENST00000407418 14.634±0.00 16.541±0.00 1.324±0.00 20.518±9.48 6.138±4.53 9.035±8.05 3.683±2.94 20.618±0.00 3.386±0.69 4.359±2.99 2.180±0.00 17.464±18.13 2.794±0.48 5.526±3.19
ENST00000469420 N/A N/A N/A N/A N/A N/A 0.321±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005NH CIL_0005NH_0001 CGP 22:38818452-38872314

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000792 IEA heterochromatin
GO:0003727 IEA single-stranded RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0016568 IEA chromatin modification
GO:0031519 IDA PcG protein complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071051 cbx6a chromobox homolog 6a protein_coding Danio_rerio
ENSDARG00000097543 cbx6b chromobox homolog 6b protein_coding Danio_rerio
ENSMUSG00000089715 Cbx6 chromobox 6 protein_coding Mus_musculus

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